Date: Sat, 15 Feb 2020 23:09:20 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r526244 - head/biology/kallisto Message-ID: <202002152309.01FN9Kmk025021@repo.freebsd.org>
next in thread | raw e-mail | index | archive | help
Author: jwb Date: Sat Feb 15 23:09:19 2020 New Revision: 526244 URL: https://svnweb.freebsd.org/changeset/ports/526244 Log: biology/kallisto: Upgrade to 0.46.2 Kallisto no longer builds in hdf5 by default, but it is still required for some downstream tools like Sleuth. Forcing it ON for now, but will disable it in a future upgrade. Reported by: portscout Modified: head/biology/kallisto/Makefile head/biology/kallisto/distinfo Modified: head/biology/kallisto/Makefile ============================================================================== --- head/biology/kallisto/Makefile Sat Feb 15 22:34:02 2020 (r526243) +++ head/biology/kallisto/Makefile Sat Feb 15 23:09:19 2020 (r526244) @@ -2,7 +2,7 @@ PORTNAME= kallisto DISTVERSIONPREFIX= v -DISTVERSION= 0.46.1 +DISTVERSION= 0.46.2 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -15,7 +15,7 @@ LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/szip \ libhts.so:biology/htslib -USES= cmake:noninja compiler:c++11-lang +USES= cmake:noninja compiler:c++11-lang localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= pachterlab @@ -25,8 +25,12 @@ PORTEXAMPLES= * PLIST_FILES= bin/kallisto EXAMPLES_PLIST_FILES= bin/kallisto-test +# hdf5 is being phased out and is no longer build in by default, but is still +# required for Sleuth and other downstream tools. Remove this after Sleuth +# et all catch up. +CMAKE_ARGS+= -DUSE_HDF5:BOOL=ON + OPTIONS_DEFINE= EXAMPLES -LDFLAGS+= -L${LOCALBASE}/lib post-install-EXAMPLES-on: ${INSTALL_SCRIPT} ${WRKDIR}/kallisto-test ${STAGEDIR}${PREFIX}/bin Modified: head/biology/kallisto/distinfo ============================================================================== --- head/biology/kallisto/distinfo Sat Feb 15 22:34:02 2020 (r526243) +++ head/biology/kallisto/distinfo Sat Feb 15 23:09:19 2020 (r526244) @@ -1,3 +1,3 @@ -TIMESTAMP = 1572972210 -SHA256 (pachterlab-kallisto-v0.46.1_GH0.tar.gz) = 492ef081395e8858fcd9832aceb8b61c79358f00afb45e6709146c0fb51dd231 -SIZE (pachterlab-kallisto-v0.46.1_GH0.tar.gz) = 2254560 +TIMESTAMP = 1581611719 +SHA256 (pachterlab-kallisto-v0.46.2_GH0.tar.gz) = 10bab0c2929d8c345750e02735b305bbbfa89e8a48f42c4b9af44f3d44ff4c82 +SIZE (pachterlab-kallisto-v0.46.2_GH0.tar.gz) = 2693857
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?202002152309.01FN9Kmk025021>