Date: Sat, 2 Mar 2019 03:38:08 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 120powerpc64-quarterly][biology/canu] Failed for canu-1.8_2 in build Message-ID: <201903020338.x223c8CX080753@pylon.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: branches/2019Q1/biology/canu/Makefile 487272 2018-12-12 01:35:33Z gerald $ Log URL: http://pylon.nyi.freebsd.org/data/120powerpc64-quarterly/494321/logs/canu-1.8_2.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=120powerpc64-quarterly&build=494321 Log: =>> Building biology/canu build started at Sat Mar 2 03:35:01 UTC 2019 port directory: /usr/ports/biology/canu package name: canu-1.8_2 building for: FreeBSD 120powerpc64-quarterly-job-06 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 powerpc maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: branches/2019Q1/biology/canu/Makefile 487272 2018-12-12 01:35:33Z gerald $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300012 Jail OSVERSION: 1200086 Job Id: 06 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200086 UNAME_v=FreeBSD 12.0-RELEASE-p3 1200086 UNAME_r=12.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=120powerpc64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/canu/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/canu/work HOME=/wrkdirs/usr/ports/biology/canu/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/canu/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- DESTDIR=/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/canu/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/canu/work HOME=/wrkdirs/usr/ports/biology/canu/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/canu/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.1 PERL_VER=5.28 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/canu" EXAMPLESDIR="share/examples/canu" DATADIR="share/canu" WWWDIR="www/canu" ETCDIR="etc/canu" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="1.8+" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/canu DOCSDIR=/usr/local/share/doc/canu EXAMPLESDIR=/usr/local/share/examples/canu WWWDIR=/usr/local/www/canu ETCDIR=/usr/local/etc/canu --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 OPSYS=FreeBSD _OSRELEASE=12.0-RELEASE-p3 OSREL=12.0 OSVERSION=1200086 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> canu-1.8_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [120powerpc64-quarterly-job-06] Installing pkg-1.10.5_5... [120powerpc64-quarterly-job-06] Extracting pkg-1.10.5_5: .......... done ===> canu-1.8_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of canu-1.8_2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by canu-1.8_2 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by canu-1.8_2 for building => SHA256 Checksum OK for marbl-canu-v1.8_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by canu-1.8_2 for building ===> Extracting for canu-1.8_2 => SHA256 Checksum OK for marbl-canu-v1.8_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for canu-1.8_2 ===> Applying FreeBSD patches for canu-1.8_2 /usr/bin/sed -i.bak -e 's|-O4||g' -e 's|-funroll-loops||g' -e 's|-fexpensive-optimizations||g' -e 's|amd64|powerpc64|g' /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/Makefile /usr/bin/sed -i.bak -e 's|\\$bin/mhap-|/usr/local/share/java/classes/mhap-|g' /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/pipelines/canu/OverlapMhap.pm /usr/bin/sed -i.bak -e 's|RealBin/lib|RealBin/../lib/perl5/site_perl/canu|g' /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/pipelines/canu.pl =========================================================================== =======================<phase: build-depends >============================ ===> canu-1.8_2 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [120powerpc64-quarterly-job-06] Installing gmake-4.2.1_3... [120powerpc64-quarterly-job-06] `-- Installing gettext-runtime-0.19.8.1_2... [120powerpc64-quarterly-job-06] | `-- Installing indexinfo-0.3.1... [120powerpc64-quarterly-job-06] | `-- Extracting indexinfo-0.3.1: .... done [120powerpc64-quarterly-job-06] `-- Extracting gettext-runtime-0.19.8.1_2: .......... done [120powerpc64-quarterly-job-06] Extracting gmake-4.2.1_3: .......... done ===> canu-1.8_2 depends on executable: gmake - found ===> Returning to build of canu-1.8_2 ===> canu-1.8_2 depends on package: perl5>=5.28.r1<5.29 - not found <snip> c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-extend.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap overlapInCore/liboverlap/prefixEditDistance-extend.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-forward.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap overlapInCore/liboverlap/prefixEditDistance-forward.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-reverse.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap overlapInCore/liboverlap/prefixEditDistance-reverse.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/overlapInCore/libedlib/edlib.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap overlapInCore/libedlib/edlib.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/NDalign.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/NDalign.C utgcns/libNDalign/NDalign.C: In member function 'bool NDalign::processHits()': utgcns/libNDalign/NDalign.C:660: warning: deprecated conversion from string constant to 'char*' utgcns/libNDalign/NDalign.C: In member function 'bool NDalign::scanDeltaForBadness(bool, bool)': utgcns/libNDalign/NDalign.C:724: warning: deprecated conversion from string constant to 'char*' utgcns/libNDalign/NDalign.C: In member function 'void NDalign::realignForward(bool, bool)': utgcns/libNDalign/NDalign.C:774: warning: deprecated conversion from string constant to 'char*' utgcns/libNDalign/NDalign.C: In member function 'void NDalign::realignBackward(bool, bool)': utgcns/libNDalign/NDalign.C:838: warning: deprecated conversion from string constant to 'char*' c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/Binomial_Bound.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/Binomial_Bound.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-allocateMoreSpace.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm-allocateMoreSpace.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-extend.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm-extend.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-forward.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm-forward.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-reverse.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm-reverse.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-addRead.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-addRead.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-appendBases.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-appendBases.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-applyAlignment.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-applyAlignment.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-baseCall.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-baseCall.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-mergeRefine.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-mergeRefine.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-refine.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-refine.C utgcns/libcns/abAbacus-refine.C:1326:2: warning: #warning SKIPPING ALL REFINEMENTS c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-refreshMultiAlign.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-refreshMultiAlign.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abColumn.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abColumn.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abMultiAlign.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abMultiAlign.C c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/unitigConsensus.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/unitigConsensus.C In file included from utgcns/libboost/boost/graph/adjacency_list.hpp:15, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/config.hpp:57:33: error: boost/config/platform/bsd.hpp: No such file or directory In file included from utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:29, from utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:28, from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/detail/sp_counted_base.hpp:57:63: error: boost/smart_ptr/detail/sp_counted_base_gcc_ppc.hpp: No such file or directory In file included from utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:30, from utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:28, from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:54: error: expected class-name before '{' token utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:81: error: 'get_deleter' declared as a 'virtual' field utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:81: error: expected ';' before '(' token utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:86: error: expected `;' before 'virtual' utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:128: error: expected class-name before '{' token utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:156: error: 'get_deleter' declared as a 'virtual' field utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:156: error: expected ';' before '(' token utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:161: error: expected `;' before 'virtual' utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:196: error: expected class-name before '{' token utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:252: error: 'get_deleter' declared as a 'virtual' field utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:252: error: expected ';' before '(' token utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:257: error: expected `;' before 'virtual' In file included from utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:28, from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:104: error: ISO C++ forbids declaration of 'sp_counted_base' with no type utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:104: error: expected ';' before '*' token utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:518: error: expected ';' before '(' token utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:523: error: expected `;' before 'void' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count()': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:114: error: class 'boost::detail::shared_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(Y*)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:121: error: class 'boost::detail::shared_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:130: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(P, D)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:154: error: class 'boost::detail::shared_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:167: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(P, boost::detail::sp_inplace_tag<D>)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:190: error: class 'boost::detail::shared_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:199: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(P, D, A)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:222: error: class 'boost::detail::shared_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:253: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:262: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(P, boost::detail::sp_inplace_tag<D>, A)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:306: error: class 'boost::detail::shared_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:337: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:346: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(std::auto_ptr<T>&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:395: error: class 'boost::detail::shared_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In destructor 'boost::detail::shared_count::~shared_count()': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:443: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In copy constructor 'boost::detail::shared_count::shared_count(const boost::detail::shared_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:449: error: class 'boost::detail::shared_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:449: error: 'const class boost::detail::shared_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:454: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'boost::detail::shared_count& boost::detail::shared_count::operator=(const boost::detail::shared_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:474: error: 'sp_counted_base' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:474: error: 'tmp' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:474: error: 'const class boost::detail::shared_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:476: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'void boost::detail::shared_count::swap(boost::detail::shared_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:488: error: 'sp_counted_base' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:488: error: 'tmp' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:488: error: 'class boost::detail::shared_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:489: error: 'class boost::detail::shared_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:489: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'long int boost::detail::shared_count::use_count() const': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:495: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'bool boost::detail::shared_count::empty() const': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:505: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In function 'bool boost::detail::operator==(const boost::detail::shared_count&, const boost::detail::shared_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:510: error: 'const class boost::detail::shared_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:510: error: 'const class boost::detail::shared_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In function 'bool boost::detail::operator<(const boost::detail::shared_count&, const boost::detail::shared_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:515: error: 'sp_counted_base' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:515: error: template argument 1 is invalid utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:515: error: 'const class boost::detail::shared_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:515: error: 'const class boost::detail::shared_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'void* boost::detail::shared_count::get_untyped_deleter() const': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:525: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: At global scope: utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:534: error: ISO C++ forbids declaration of 'sp_counted_base' with no type utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:534: error: expected ';' before '*' token utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::weak_count::weak_count()': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:544: error: class 'boost::detail::weak_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::weak_count::weak_count(const boost::detail::shared_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:551: error: class 'boost::detail::weak_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:551: error: 'const class boost::detail::shared_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:556: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In copy constructor 'boost::detail::weak_count::weak_count(const boost::detail::weak_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:559: error: class 'boost::detail::weak_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:559: error: 'const class boost::detail::weak_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:564: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In destructor 'boost::detail::weak_count::~weak_count()': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:583: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'boost::detail::weak_count& boost::detail::weak_count::operator=(const boost::detail::shared_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:591: error: 'sp_counted_base' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:591: error: 'tmp' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:591: error: 'const class boost::detail::shared_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:593: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'boost::detail::weak_count& boost::detail::weak_count::operator=(const boost::detail::weak_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:605: error: 'sp_counted_base' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:605: error: 'tmp' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:605: error: 'const class boost::detail::weak_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:607: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'void boost::detail::weak_count::swap(boost::detail::weak_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:619: error: 'sp_counted_base' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:619: error: 'tmp' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:619: error: 'class boost::detail::weak_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:620: error: 'class boost::detail::weak_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:620: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'long int boost::detail::weak_count::use_count() const': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:626: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'bool boost::detail::weak_count::empty() const': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:631: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In function 'bool boost::detail::operator==(const boost::detail::weak_count&, const boost::detail::weak_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:636: error: 'const class boost::detail::weak_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:636: error: 'const class boost::detail::weak_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In function 'bool boost::detail::operator<(const boost::detail::weak_count&, const boost::detail::weak_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:641: error: 'sp_counted_base' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:641: error: template argument 1 is invalid utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:641: error: 'const class boost::detail::weak_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:641: error: 'const class boost::detail::weak_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(const boost::detail::weak_count&)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:645: error: class 'boost::detail::shared_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:645: error: 'const class boost::detail::weak_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:650: error: 'pi_' was not declared in this scope utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(const boost::detail::weak_count&, boost::detail::sp_nothrow_tag)': utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:656: error: class 'boost::detail::shared_count' does not have any field named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:656: error: 'const class boost::detail::weak_count' has no member named 'pi_' utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:661: error: 'pi_' was not declared in this scope In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp: At global scope: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:695: error: expected ';' before '(' token utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:700: error: expected `;' before 'void' utgcns/libboost/boost/smart_ptr/shared_ptr.hpp: In function 'D* boost::detail::basic_get_deleter(const boost::shared_ptr<U>&)': utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:887: error: expected primary-expression before ')' token utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:887: error: there are no arguments to 'BOOST_SP_TYPEID' that depend on a template parameter, so a declaration of 'BOOST_SP_TYPEID' must be available utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:887: error: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated) utgcns/libcns/unitigConsensus.C: In member function 'bool unitigConsensus::alignFragment(bool)': utgcns/libcns/unitigConsensus.C:1562: warning: deprecated conversion from string constant to 'char*' utgcns/libcns/unitigConsensus.C:1660: warning: deprecated conversion from string constant to 'char*' gmake[1]: *** [Makefile:708: /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/unitigConsensus.o] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src' *** Error code 1 Stop. make: stopped in /usr/ports/biology/canu
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