Date: Tue, 7 May 2019 04:00:37 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 120powerpc64-quarterly][biology/freebayes] Failed for freebayes-1.2.0_1 in build Message-ID: <201905070400.x4740bka046884@pylon.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: branches/2019Q2/biology/freebayes/Makefile 487272 2018-12-12 01:35:33Z gerald $ Log URL: http://pylon.nyi.freebsd.org/data/120powerpc64-quarterly/500941/logs/freebayes-1.2.0_1.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=120powerpc64-quarterly&build=500941 Log: =>> Building biology/freebayes build started at Tue May 7 03:48:56 UTC 2019 port directory: /usr/ports/biology/freebayes package name: freebayes-1.2.0_1 building for: FreeBSD 120powerpc64-quarterly-job-19 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 powerpc maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: branches/2019Q2/biology/freebayes/Makefile 487272 2018-12-12 01:35:33Z gerald $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300012 Jail OSVERSION: 1200086 Job Id: 19 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200086 UNAME_v=FreeBSD 12.0-RELEASE-p3 1200086 UNAME_r=12.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=120powerpc64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/freebayes/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/freebayes/work HOME=/wrkdirs/usr/ports/biology/freebayes/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/freebayes/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/freebayes/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/freebayes/work HOME=/wrkdirs/usr/ports/biology/freebayes/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/freebayes/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="gcc8" CFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing " CPP="cpp8" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 " LIBS="" CXX="g++8" CXXFLAG S="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc8 --std=c++11 -Wl,-rpath=/usr/local/lib/gcc8 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/freebayes" EXAMPLESDIR="share/examples/freebayes" DATADIR="share/freebayes" WWWDIR="www/freebayes" ETCDIR="etc/freebayes" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/freebayes DOCSDIR=/usr/local/share/doc/freebayes EXAMPLESDIR=/usr/local/share/examples/freebayes WWWDIR=/usr/local/www/freebayes ETCDIR=/usr/local/etc/freebayes --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 OPSYS=FreeBSD _OSRELEASE=12.0-RELEASE-p3 OSREL=12.0 OSVERSION=1200086 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> freebayes-1.2.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [120powerpc64-quarterly-job-19] Installing pkg-1.10.5_5... [120powerpc64-quarterly-job-19] Extracting pkg-1.10.5_5: .......... done ===> freebayes-1.2.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of freebayes-1.2.0_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by freebayes-1.2.0_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by freebayes-1.2.0_1 for building => SHA256 Checksum OK for ekg-freebayes-v1.2.0_GH0.tar.gz. => SHA256 Checksum OK for walaj-SeqLib-5941c68_GH0.tar.gz. => SHA256 Checksum OK for jwalabroad-bwa-c02766e_GH0.tar.gz. => SHA256 Checksum OK for jwalabroad-fermi-lite-5bc90f8_GH0.tar.gz. => SHA256 Checksum OK for samtools-htslib-49fdfbd_GH0.tar.gz. => SHA256 Checksum OK for ekg-bamtools-e77a43f_GH0.tar.gz. => SHA256 Checksum OK for ekg-intervaltree-dbb4c51_GH0.tar.gz. => SHA256 Checksum OK for vcflib-vcflib-5e3ce04_GH0.tar.gz. => SHA256 Checksum OK for ekg-fastahack-c68cebb_GH0.tar.gz. => SHA256 Checksum OK for ekg-filevercmp-1a9b779_GH0.tar.gz. => SHA256 Checksum OK for ekg-fsom-a6ef318_GH0.tar.gz. => SHA256 Checksum OK for google-googletest-d225acc_GH0.tar.gz. => SHA256 Checksum OK for ekg-intervaltree-b704f19_GH0.tar.gz. => SHA256 Checksum OK for ekg-multichoose-73d35da_GH0.tar.gz. => SHA256 Checksum OK for ekg-smithwaterman-84c08d7_GH0.tar.gz. => SHA256 Checksum OK for ekg-tabixpp-80012f8_GH0.tar.gz. => SHA256 Checksum OK for samtools-htslib-0f298ce_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by freebayes-1.2.0_1 for building ===> Extracting for freebayes-1.2.0_1 => SHA256 Checksum OK for ekg-freebayes-v1.2.0_GH0.tar.gz. => SHA256 Checksum OK for walaj-SeqLib-5941c68_GH0.tar.gz. => SHA256 Checksum OK for jwalabroad-bwa-c02766e_GH0.tar.gz. => SHA256 Checksum OK for jwalabroad-fermi-lite-5bc90f8_GH0.tar.gz. => SHA256 Checksum OK for samtools-htslib-49fdfbd_GH0.tar.gz. => SHA256 Checksum OK for ekg-bamtools-e77a43f_GH0.tar.gz. => SHA256 Checksum OK for ekg-intervaltree-dbb4c51_GH0.tar.gz. <snip> /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2138:47: error: expected ')' before 'pmask' r = vec_perm (a, a, (__vector unsigned char)pmask); ^~~~~ ) /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_shuffle_epi32': /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2157:9: error: expected ';' before 't' __v4su t; ^~ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2165:3: error: 't' undeclared (first use in this function) t[3] = permute_selectors[element_selector_10] + 0x10101010; ^ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2170:37: error: expected ')' before '__A' return (__m128i)vec_perm ((__v4si) __A, (__v4si)__A, (__vector unsigned char)t); ^~~~ ) /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2170:29: error: incompatible type for argument 1 of '__builtin_vec_perm' return (__m128i)vec_perm ((__v4si) __A, (__v4si)__A, (__vector unsigned char)t); ^~~~~~~~ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2170:29: note: expected '__vector(4) int' but argument is of type 'int' In file included from /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:62, from ksw.c:29: /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2170:19: error: too few arguments to function '__builtin_vec_perm' return (__m128i)vec_perm ((__v4si) __A, (__v4si)__A, (__vector unsigned char)t); ^~~~~~~~ In file included from ksw.c:29: /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_maskmoveu_si128': /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2176:9: error: expected ';' before 'hibit' __v2du hibit = { 0x7f7f7f7f7f7f7f7fUL, 0x7f7f7f7f7f7f7f7fUL}; ^~~~~~ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2177:10: error: expected ';' before 'mask' __v16qu mask, tmp; ^~~~~ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2180:3: error: 'tmp' undeclared (first use in this function); did you mean 'mktemp'? tmp = (__v16qu)_mm_loadu_si128(p); ^~~ mktemp /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2180:18: error: expected ';' before '_mm_loadu_si128' tmp = (__v16qu)_mm_loadu_si128(p); ^~~~~~~~~~~~~~~ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2181:3: error: 'mask' undeclared (first use in this function) mask = (__v16qu)vec_cmpgt ((__v16qu)__B, (__v16qu)hibit); ^~~~ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2181:19: error: expected ';' before '__builtin_vec_cmpgt' mask = (__v16qu)vec_cmpgt ((__v16qu)__B, (__v16qu)hibit); ^ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2182:32: error: expected ')' before '__A' tmp = vec_sel (tmp, (__v16qu)__A, mask); ^~~ ) /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_avg_epu8': /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2189:38: error: expected ')' before '__A' return (__m128i) vec_avg ((__v16qu)__A, (__v16qu)__B); ^~~ ) /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2189:29: error: incompatible type for argument 1 of '__builtin_vec_avg' return (__m128i) vec_avg ((__v16qu)__A, (__v16qu)__B); ^~~~~~~~~ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2189:29: note: expected '__vector(4) int' but argument is of type 'unsigned char' In file included from /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:62, from ksw.c:29: /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2189:20: error: too few arguments to function '__builtin_vec_avg' return (__m128i) vec_avg ((__v16qu)__A, (__v16qu)__B); ^~~~~~~ In file included from ksw.c:29: /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_avg_epu16': /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2195:37: error: expected ')' before '__A' return (__m128i) vec_avg ((__v8hu)__A, (__v8hu)__B); ^~~ ) /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2195:29: error: incompatible type for argument 1 of '__builtin_vec_avg' return (__m128i) vec_avg ((__v8hu)__A, (__v8hu)__B); ^~~~~~~~ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2195:29: note: expected '__vector(4) int' but argument is of type 'short unsigned int' In file included from /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:62, from ksw.c:29: /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2195:20: error: too few arguments to function '__builtin_vec_avg' return (__m128i) vec_avg ((__v8hu)__A, (__v8hu)__B); ^~~~~~~ In file included from ksw.c:29: /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_sad_epu8': /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2202:10: error: expected ';' before 'a' __v16qu a, b; ^~ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2203:10: error: expected ';' before 'vmin' __v16qu vmin, vmax, vabsdiff; ^~~~~ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2204:9: error: expected ';' before 'vsum' __v4si vsum; ^~~~~ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2205:16: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'zero' const __v4su zero = { 0, 0, 0, 0 }; ^~~~ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2205:16: error: 'zero' undeclared (first use in this function) /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2205:23: error: expected expression before '{' token const __v4su zero = { 0, 0, 0, 0 }; ^ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2206:9: error: expected ';' before 'result' __v4si result; ^~~~~~~ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2208:3: error: 'a' undeclared (first use in this function) a = (__v16qu) __A; ^ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2208:16: error: expected ';' before '__A' a = (__v16qu) __A; ^~~~ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2209:3: error: 'b' undeclared (first use in this function) b = (__v16qu) __B; ^ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2209:16: error: expected ';' before '__B' b = (__v16qu) __B; ^~~~ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2210:3: error: 'vmin' undeclared (first use in this function); did you mean 'void'? vmin = vec_min (a, b); ^~~~ void /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2211:3: error: 'vmax' undeclared (first use in this function) vmax = vec_max (a, b); ^~~~ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2212:3: error: 'vabsdiff' undeclared (first use in this function) vabsdiff = vec_sub (vmax, vmin); ^~~~~~~~ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2214:3: error: 'vsum' undeclared (first use in this function) vsum = (__vector signed int) vec_sum4s (vabsdiff, zero); ^~~~ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2214:11: error: '__vector' undeclared (first use in this function); did you mean 'vector'? vsum = (__vector signed int) vec_sum4s (vabsdiff, zero); ^~~~~~~~ vector /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2214:19: error: expected ')' before 'signed' vsum = (__vector signed int) vec_sum4s (vabsdiff, zero); ~ ^~~~~~~ ) /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2214:31: error: expected ';' before '__builtin_vec_sum4s' vsum = (__vector signed int) vec_sum4s (vabsdiff, zero); ^ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2216:3: error: 'result' undeclared (first use in this function) result = vec_sum2s (vsum, (__vector signed int) zero); ^~~~~~ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2216:38: error: expected ')' before 'signed' result = vec_sum2s (vsum, (__vector signed int) zero); ~ ^~~~~~~ ) /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2216:50: error: expected ')' before 'zero' result = vec_sum2s (vsum, (__vector signed int) zero); ^~~~~ ) /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_cvtsi64_si128': /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2314:3: error: can't convert a value of type 'long long int' to vector type '__vector(2) long long int' which has different size return __extension__ (__m128i)(__v2di){ __A, 0LL }; ^~~~~~ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2314:41: error: expected ';' before '{' token return __extension__ (__m128i)(__v2di){ __A, 0LL }; ^ ; /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_cvtsi64x_si128': /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2321:3: error: can't convert a value of type 'long long int' to vector type '__vector(2) long long int' which has different size return __extension__ (__m128i)(__v2di){ __A, 0LL }; ^~~~~~ /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2321:41: error: expected ';' before '{' token return __extension__ (__m128i)(__v2di){ __A, 0LL }; ^ ; ksw.c: In function 'ksw_u8': ksw.c:185:11: warning: implicit declaration of function '_mm_movemask_epi8'; did you mean '_mm_movemask_pi8'? [-Wimplicit-function-declaration] cmp = _mm_movemask_epi8(_mm_cmpeq_epi8(_mm_subs_epu8(f, h), zero)); ^~~~~~~~~~~~~~~~~ _mm_movemask_pi8 ksw.c:185:5: error: AltiVec argument passed to unprototyped function cmp = _mm_movemask_epi8(_mm_cmpeq_epi8(_mm_subs_epu8(f, h), zero)); ^~~ ksw.c: In function 'ksw_i16': ksw.c:293:5: error: AltiVec argument passed to unprototyped function if(UNLIKELY(!_mm_movemask_epi8(_mm_cmpgt_epi16(f, h)))) goto end_loop8; ^~ gmake[5]: *** [Makefile:26: ksw.o] Error 1 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib/bwa' gmake[4]: *** [Makefile:358: all-recursive] Error 1 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib' gmake[3]: *** [Makefile:299: all] Error 2 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib' gmake[2]: *** [Makefile:53: ../SeqLib/src/libseqlib.a] Error 2 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/src' gmake[1]: *** [Makefile:2: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0' *** Error code 1 Stop. make: stopped in /usr/ports/biology/freebayes
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