Date: Thu, 16 Jul 2015 19:16:22 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-mips-default][science/openbabel] Failed for openbabel-2.3.2_2 in build Message-ID: <201507161916.t6GJGMPW099340@beefy7.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: makc@FreeBSD.org Last committer: marino@FreeBSD.org Ident: $FreeBSD: head/science/openbabel/Makefile 384227 2015-04-18 13:49:18Z marino $ Log URL: http://beefy7.nyi.freebsd.org/data/head-mips-default/p392247_s285616/logs/openbabel-2.3.2_2.log Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p392247_s285616 Log: ====>> Building science/openbabel build started at Thu Jul 16 15:50:07 UTC 2015 port directory: /usr/ports/science/openbabel building for: FreeBSD head-mips-default-job-09 11.0-CURRENT FreeBSD 11.0-CURRENT r285616 mips maintained by: makc@FreeBSD.org Makefile ident: $FreeBSD: head/science/openbabel/Makefile 384227 2015-04-18 13:49:18Z marino $ Poudriere version: 3.1.7 Host OSVERSION: 1100076 Jail OSVERSION: 1100077 !!! Jail is newer than host. (Jail: 1100077, Host: 1100076) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- UNAME_p=mips UNAME_m=mips ABI_FILE=/usr/lib/crt1.o OSVERSION=1100077 UNAME_v=FreeBSD 11.0-CURRENT r285616 UNAME_r=11.0-CURRENT LC_COLLATE=C BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=openbabel-2.3.2_2 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool MASTERNAME=head-mips-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.7 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for openbabel-2.3.2_2: CAIRO=off: PNG support via cairo library PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- VERSION="2.3.2" CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VERSION=python2.7 PYTHON_VER=2.7 OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" DOCSDIR="share/doc/openbabel" EXAMPLESDIR="share/examples/openbabel" DATADIR="share/openbabel" WWWDIR="www/openbabel" ETCDIR="etc/openbabel" --End PLIST_SUB-- --SUB_LIST-- CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openbabel DOCSDIR=/usr/local/share/doc/openbabel EXAMPLESDIR=/usr/local/share/examples/openbabel WWWDIR=/usr/local/www/openbabel ETCDIR=/usr/local/etc/openbabel --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf <snip> /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake Scanning dependencies of target gausszmatformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles 17 [ 60%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dgausszmatformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/gausszmatformat.dir/gausszmatformat.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/gausszmatformat.cpp Linking CXX shared module ../../lib/gausszmatformat.so cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1 /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,gausszmatformat.so -o ../../lib/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles 17 [ 60%] Built target gausszmatformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake Scanning dependencies of target ghemicalformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 60%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dghemicalformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/ghemicalformat.dir/ghemicalformat.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/ghemicalformat.cpp Linking CXX shared module ../../lib/ghemicalformat.so cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,ghemicalformat.so -o ../../lib/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 60%] Built target ghemicalformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake Scanning dependencies of target groformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 60%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dgroformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/groformat.dir/groformat.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/groformat.cpp Linking CXX shared module ../../lib/groformat.so cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,groformat.so -o ../../lib/groformat.so CMakeFiles/groformat.dir/groformat.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 60%] Built target groformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake Scanning dependencies of target gromos96format /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles 18 [ 61%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dgromos96format_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/gromos96format.dir/gromos96format.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/gromos96format.cpp Linking CXX shared module ../../lib/gromos96format.so cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,gromos96format.so -o ../../lib/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles 18 [ 61%] Built target gromos96format /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake Scanning dependencies of target gulpformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 61%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dgulpformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/gulpformat.dir/gulpformat.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/gulpformat.cpp Linking CXX shared module ../../lib/gulpformat.so cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1 /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,gulpformat.so -o ../../lib/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 61%] Built target gulpformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake Scanning dependencies of target hinformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 61%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ 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dependencies of target inchiformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 61%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dinchiformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 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src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake Scanning dependencies of target jaguarformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 62%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ 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-O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,jaguarformat.so -o ../../lib/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 62%] Built target jaguarformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake Scanning dependencies of target lmpdatformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 62%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dlmpdatformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/lmpdatformat.dir/lmpdatformat.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/lmpdatformat.cpp Linking CXX shared module ../../lib/lmpdatformat.so cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,lmpdatformat.so -o ../../lib/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 62%] Built target lmpdatformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake Scanning dependencies of target mdlformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles 33 [ 63%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmdlformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/mdlformat.dir/mdlformat.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/mdlformat.cpp Linking CXX shared module ../../lib/mdlformat.so cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,mdlformat.so -o ../../lib/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles 33 [ 63%] Built target mdlformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake Scanning dependencies of target mmcifformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 63%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmmcifformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/mmcifformat.dir/mmcifformat.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/mmcifformat.cpp Linking CXX shared module ../../lib/mmcifformat.so cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,mmcifformat.so -o ../../lib/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 63%] Built target mmcifformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake Scanning dependencies of target mmodformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 63%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmmodformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/mmodformat.dir/mmodformat.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/mmodformat.cpp Linking CXX shared module ../../lib/mmodformat.so cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,mmodformat.so -o ../../lib/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 63%] Built target mmodformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake Scanning dependencies of target mol2format /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 63%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmol2format_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/mol2format.dir/mol2format.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/mol2format.cpp Linking CXX shared module ../../lib/mol2format.so cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,mol2format.so -o ../../lib/mol2format.so CMakeFiles/mol2format.dir/mol2format.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 63%] Built target mol2format /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake Scanning dependencies of target moldenformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles 34 [ 64%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmoldenformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/moldenformat.dir/moldenformat.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/moldenformat.cpp Linking CXX shared module ../../lib/moldenformat.so cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1 /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,moldenformat.so -o ../../lib/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles 34 [ 64%] Built target moldenformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake Scanning dependencies of target molproformat /nxb-bin/usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles [ 64%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.o cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmolproformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/molproformat.dir/molproformat.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/molproformat.cpp *** Signal 15 Stop. make: stopped in /usr/ports/science/openbabel c++: Internal error: Terminated (program cc1plus) Please submit a full bug report. See <URL:http://www.freebsd.org/support.html>; for instructions. *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/science/openbabel/work/.build *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/openbabel/work/.build *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/openbabel/work/.build
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