Date: Tue, 25 Oct 2016 16:16:19 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 110arm64-default][biology/muscle] Failed for muscle-3.8.31 in build Message-ID: <201610251616.u9PGGJm9064585@thunderx1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mzaki@m.u-tokyo.ac.jp Last committer: swills@FreeBSD.org Ident: $FreeBSD: head/biology/muscle/Makefile 403676 2015-12-13 16:07:27Z swills $ Log URL: http://thunderx1.nyi.freebsd.org/data/110arm64-default/424595/logs/muscle-3.8.31.log Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-default&build=424595 Log: ====>> Building biology/muscle build started at Tue Oct 25 16:15:48 UTC 2016 port directory: /usr/ports/biology/muscle building for: FreeBSD 110arm64-default-job-11 11.0-RELEASE-p1 FreeBSD 11.0-RELEASE-p1 r306420 arm64 maintained by: mzaki@m.u-tokyo.ac.jp Makefile ident: $FreeBSD: head/biology/muscle/Makefile 403676 2015-12-13 16:07:27Z swills $ Poudriere version: 3.1.14 Host OSVERSION: 1100121 Jail OSVERSION: 1100122 !!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_v=FreeBSD 11.0-RELEASE-p1 r306420 UNAME_r=11.0-RELEASE-p1 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=aarch64 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110arm64-default/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=muscle-3.8.31 OSREL=11.0 _OSRELEASE=11.0-RELEASE-p1 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=48 PWD=/usr/local/poudriere/data/.m/110arm64-default/ref/.p/pool MASTERNAME=110arm64-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1100122 ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/muscle/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/muscle/work HOME=/wrkdirs/usr/ports/biology/muscle/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/muscle/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/muscle/work HOME=/wrkdirs/usr/ports/biology/muscle/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/muscle" EXAMPLESDIR="share/examples/muscle" DATADIR="share/muscle" WWWDIR="www/muscle" ETCDIR="etc/muscle" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/muscle DOCSDIR=/usr/local/share/doc/muscle EXAMPLESDIR=/usr/local/share/examples/muscle WWWDIR=/usr/local/www/muscle ETCDIR=/usr/local/etc/muscle --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> muscle-3.8.31 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.9.1.txz [110arm64-default-job-11] Installing pkg-1.9.1... [110arm64-default-job-11] Extracting pkg-1.9.1: .......... done ===> muscle-3.8.31 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of muscle-3.8.31 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by muscle-3.8.31 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by muscle-3.8.31 for building => SHA256 Checksum OK for muscle3.8.31_src.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by muscle-3.8.31 for building ===> Extracting for muscle-3.8.31 => SHA256 Checksum OK for muscle3.8.31_src.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for muscle-3.8.31 ===> Converting DOS text files to UNIX text files ===> Applying FreeBSD patches for muscle-3.8.31 =========================================================================== =======================<phase: build-depends >============================ =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for muscle-3.8.31 =========================================================================== =======================<phase: build >============================ ===> Building for muscle-3.8.31 chmod +x ./mk ./mk ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported ./mk: cannot create /dev/tty: Operation not supported c++: error: no such file or directory: 'tracebackopt.o' c++: error: no such file or directory: 'tracebacksw.o' c++: error: no such file or directory: 'treefrommsa.o' c++: error: no such file or directory: 'typetostr.o' c++: error: no such file or directory: 'upgma2.o' c++: error: no such file or directory: 'usage.o' c++: error: no such file or directory: 'validateids.o' c++: error: no such file or directory: 'vtml2.o' c++: error: no such file or directory: 'writescorefile.o' c++: error: no input files ls: muscle: No such file or directory sum: muscle: No such file or directory *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/muscle/work/muscle3.8.31/src *** Error code 1 Stop. make: stopped in /usr/ports/biology/muscle
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