From owner-svn-ports-all@freebsd.org Sat May 2 20:32:34 2020 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 84A722C27D6; Sat, 2 May 2020 20:32:34 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 49F15G317Jz4dj7; Sat, 2 May 2020 20:32:34 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 5FB4B27670; Sat, 2 May 2020 20:32:34 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 042KWYlg062452; Sat, 2 May 2020 20:32:34 GMT (envelope-from jrm@FreeBSD.org) Received: (from jrm@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 042KWYXU062450; Sat, 2 May 2020 20:32:34 GMT (envelope-from jrm@FreeBSD.org) Message-Id: <202005022032.042KWYXU062450@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jrm set sender to jrm@FreeBSD.org using -f From: Joseph Mingrone Date: Sat, 2 May 2020 20:32:34 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r533706 - head/biology/iqtree X-SVN-Group: ports-head X-SVN-Commit-Author: jrm X-SVN-Commit-Paths: head/biology/iqtree X-SVN-Commit-Revision: 533706 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 02 May 2020 20:32:34 -0000 Author: jrm Date: Sat May 2 20:32:33 2020 New Revision: 533706 URL: https://svnweb.freebsd.org/changeset/ports/533706 Log: biology/iqtree: Update to version 2.0.4 Modified: head/biology/iqtree/Makefile (contents, props changed) head/biology/iqtree/distinfo (contents, props changed) Modified: head/biology/iqtree/Makefile ============================================================================== --- head/biology/iqtree/Makefile Sat May 2 20:26:26 2020 (r533705) +++ head/biology/iqtree/Makefile Sat May 2 20:32:33 2020 (r533706) @@ -2,7 +2,7 @@ PORTNAME= iqtree DISTVERSIONPREFIX= v -DISTVERSION= 1.6.12 +DISTVERSION= 2.0.4 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org @@ -16,6 +16,8 @@ BROKEN_armv6= fails to compile: unrecognized command BROKEN_armv7= fails to compile: unrecognized command line options '-m32' and '-msse3' BROKEN_powerpc64= fails to build: GCC version must be at least 4.8! +LIB_DEPENDS= libboost_filesystem.so:devel/boost-libs + USES= cmake compiler:openmp eigen:3 USE_GITHUB= yes GH_ACCOUNT= Cibiv @@ -27,7 +29,7 @@ PORTEXAMPLES= example.cf example.nex example.phy model OPTIONS_DEFINE= EXAMPLES do-install: - ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/iqtree ${STAGEDIR}${PREFIX}/bin + ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/iqtree2 ${STAGEDIR}${PREFIX}/bin/iqtree do-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} Modified: head/biology/iqtree/distinfo ============================================================================== --- head/biology/iqtree/distinfo Sat May 2 20:26:26 2020 (r533705) +++ head/biology/iqtree/distinfo Sat May 2 20:32:33 2020 (r533706) @@ -1,3 +1,3 @@ -TIMESTAMP = 1566849788 -SHA256 (Cibiv-IQ-TREE-v1.6.12_GH0.tar.gz) = 9614092de7a157de82c9cc402b19cc8bfa0cb0ffc93b91817875c2b4bb46a284 -SIZE (Cibiv-IQ-TREE-v1.6.12_GH0.tar.gz) = 4864641 +TIMESTAMP = 1588445637 +SHA256 (Cibiv-IQ-TREE-v2.0.4_GH0.tar.gz) = 31e42259a518da057c61f2f8426cf63c16cc6c5b622fa04e83bf82ac4233ff76 +SIZE (Cibiv-IQ-TREE-v2.0.4_GH0.tar.gz) = 5264823