From nobody Thu Jan 18 23:20:59 2024 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4TGJdl555zz57Fxp; Thu, 18 Jan 2024 23:20:59 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4TGJdl4Hpyz4PP9; Thu, 18 Jan 2024 23:20:59 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1705620059; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=MGFlKzjKB2scVUHZedRepx03+WMvS7UulZZcKbHVLb0=; b=KnYO6dw9roYcxfgvLNXeb9KPxBSnXXLxcnXCpyBNVFYuRvgGJX7OdyznPtrgE8e1Y7SNaP OfFFJtnxcvngrT03y/sr89UOYNrx0IbMX7udoQi28+TxsYXqaT9DPuwOu9zODR6+aNviCR q7NQwFEieb957uRZbRBFsOAKH6xwMDg+pi6lN2wN9bvQKlZgG+OeTQ6AlD0U5dydpQ7drg gizCJX3l5+L26hGKU6g3Dls+Mzk/Nu3LDVdjs0z3NjVkimOsVnIQglf0joQ6DTqQE6rW8j 7STWpBGRPJrxtCCNInfdWYFjiQ70d107tn5QSLlKYQxz78BYk7J4p6k0TM/TWQ== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1705620059; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=MGFlKzjKB2scVUHZedRepx03+WMvS7UulZZcKbHVLb0=; b=DBuC49UamoIcUX7GyCELeqhbYC9pmcH+G3+BwCvN574zHWV8ayXPa9VcS8H2Xf2glnfras QRu5QC8OFhxcJ7JU3joHP+CzU+6CEGQEYcrM87Mtx7FY+BuiGACKnXxbGon5GubfGgg5BK lTCuQS+P41i/rPWctlu9HMcgVMdQ4mB8yGh8djK4gOyYbX7+Bofm3hYzENFT35/ic0ADEy szPhElthKNYQYZ3f/sFRreZQfdcMMWSxiWxq45tiL7aQTjkRjX53aRW4rw7lF9YOub/r9y vdJ+6RdTNHtOIVM41MP/IpWBs1cYb0XWfZgczH1Foi7aCN8VNNgLWJGM+6L9gA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1705620059; a=rsa-sha256; cv=none; b=Dg81DT+37aDTGFAVi3ejHZlnnrefcFtV1CfnPuEsdRj//NkrHwU1K1/BJgRtmL3y/kHYId 8d8xiMPs0gpChUkGVHQGBtLsEwaTYVWUAznU/FVlNGLtb/9rEVPyEKcZwm0VG9yJsRMwir vqv+k/QCRY4rYDVOs/hKFIAfUY7d79uj8Dq1Sj4wLKfdw+hMie4H8f1hL+b3QpLp2CuB+V 8Fmtriplfnj+TArPawkhrOIq8bVlvghvc0EuUCZNK4B4F9s8q0mw9YFLn4azIXAPBh2n1Q C5c6BuGKMpsymSkV0kCsrJR1Jy2TCuIJrA5EXj+B1iDQrK1x5SFfhwn90I6Xeg== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4TGJdl3MVDzRhM; Thu, 18 Jan 2024 23:20:59 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 40INKxX2087273; Thu, 18 Jan 2024 23:20:59 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 40INKxfu087270; Thu, 18 Jan 2024 23:20:59 GMT (envelope-from git) Date: Thu, 18 Jan 2024 23:20:59 GMT Message-Id: <202401182320.40INKxfu087270@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 6bb47afdcc76 - main - biology/bowtie2: Update to 2.5.3 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 6bb47afdcc76e781b91e516bc1ceedd146447d24 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=6bb47afdcc76e781b91e516bc1ceedd146447d24 commit 6bb47afdcc76e781b91e516bc1ceedd146447d24 Author: Jason W. Bacon AuthorDate: 2024-01-18 23:20:08 +0000 Commit: Jason W. Bacon CommitDate: 2024-01-18 23:20:08 +0000 biology/bowtie2: Update to 2.5.3 A few bug fixes Add option for faster indexing of small indexes Reported by: portscout --- biology/bowtie2/Makefile | 2 +- biology/bowtie2/distinfo | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/biology/bowtie2/Makefile b/biology/bowtie2/Makefile index 88d57745908b..857094896002 100644 --- a/biology/bowtie2/Makefile +++ b/biology/bowtie2/Makefile @@ -1,6 +1,6 @@ PORTNAME= bowtie2 DISTVERSIONPREFIX= v -DISTVERSION= 2.5.2 +DISTVERSION= 2.5.3 CATEGORIES= biology perl5 python MAINTAINER= jwb@FreeBSD.org diff --git a/biology/bowtie2/distinfo b/biology/bowtie2/distinfo index fd7a62f2ce84..e9a9a0e0ba4c 100644 --- a/biology/bowtie2/distinfo +++ b/biology/bowtie2/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1697555094 -SHA256 (BenLangmead-bowtie2-v2.5.2_GH0.tar.gz) = 2f86dbfbf3dcb8521d559f830594fe28ac6e4c40d81313a8c2bfb17c82a501e0 -SIZE (BenLangmead-bowtie2-v2.5.2_GH0.tar.gz) = 10632647 +TIMESTAMP = 1705618664 +SHA256 (BenLangmead-bowtie2-v2.5.3_GH0.tar.gz) = 4ac3ece3db011322caab14678b9d80cfc7f75208cdaf0c58b24a6ea0f1a0a60e +SIZE (BenLangmead-bowtie2-v2.5.3_GH0.tar.gz) = 10635819 SHA256 (simd-everywhere-simde-no-tests-f6a0b3b_GH0.tar.gz) = 9874f22afe8a6cd92770aa194df47db3d0963d80ea233a502b0d557f59763eb8 SIZE (simd-everywhere-simde-no-tests-f6a0b3b_GH0.tar.gz) = 397743