From owner-svn-ports-all@freebsd.org Fri Oct 25 23:41:47 2019 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 8FCB715F0BA; Fri, 25 Oct 2019 23:41:47 +0000 (UTC) (envelope-from tcberner@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 470LHH43mVz4D45; Fri, 25 Oct 2019 23:41:47 +0000 (UTC) (envelope-from tcberner@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 6FD142E088; Fri, 25 Oct 2019 23:41:47 +0000 (UTC) (envelope-from tcberner@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x9PNfluU020896; Fri, 25 Oct 2019 23:41:47 GMT (envelope-from tcberner@FreeBSD.org) Received: (from tcberner@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x9PNfYwA020825; Fri, 25 Oct 2019 23:41:34 GMT (envelope-from tcberner@FreeBSD.org) Message-Id: <201910252341.x9PNfYwA020825@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: tcberner set sender to tcberner@FreeBSD.org using -f From: "Tobias C. Berner" Date: Fri, 25 Oct 2019 23:41:34 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r515671 - in head: astro/gnuastro astro/siril audio/p5-Audio audio/snd benchmarks/flowgrind biology/bcftools biology/gemma biology/viennarna comms/gnuradio editors/calligra graphics/enb... X-SVN-Group: ports-head X-SVN-Commit-Author: tcberner X-SVN-Commit-Paths: in head: astro/gnuastro astro/siril audio/p5-Audio audio/snd benchmarks/flowgrind biology/bcftools biology/gemma biology/viennarna comms/gnuradio editors/calligra graphics/enblend graphics/inkscape gr... X-SVN-Commit-Revision: 515671 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 25 Oct 2019 23:41:47 -0000 Author: tcberner Date: Fri Oct 25 23:41:34 2019 New Revision: 515671 URL: https://svnweb.freebsd.org/changeset/ports/515671 Log: math/gsl: update to 2.6 - math/p5-Math-GSL does not seem to have any upstream activity to make it work with this version -> mark it broken - this also breaks the two consumers of this port - biology/gemma: has a conflict with cblas, and is makred broken. PR: 241363 Exp-run by: antoine Modified: head/astro/gnuastro/Makefile head/astro/siril/Makefile head/audio/p5-Audio/Makefile head/audio/snd/Makefile head/benchmarks/flowgrind/Makefile head/biology/bcftools/Makefile head/biology/gemma/Makefile head/biology/viennarna/Makefile head/comms/gnuradio/Makefile head/editors/calligra/Makefile head/graphics/enblend/Makefile head/graphics/inkscape/Makefile head/graphics/krita/Makefile head/graphics/luminance-qt5/Makefile head/graphics/mandelbulber/Makefile head/graphics/nip2/Makefile head/graphics/pfstools/Makefile head/graphics/qgis-ltr/Makefile head/graphics/qgis/Makefile head/graphics/xaos/Makefile head/lang/algol68g/Makefile head/mail/bogofilter-kc/Makefile head/mail/bogofilter-lmdb/Makefile head/mail/bogofilter-sqlite/Makefile head/mail/bogofilter-tc/Makefile head/mail/bogofilter/Makefile head/math/asymptote/Makefile head/math/deal.ii/Makefile head/math/dieharder/Makefile head/math/fflas-ffpack/Makefile head/math/giacxcas/Makefile head/math/gsl/Makefile head/math/gsl/distinfo head/math/gsl/pkg-plist head/math/labplot/Makefile head/math/mandelbulber2/Makefile head/math/mathgl/Makefile head/math/mcsim/Makefile head/math/ocamlgsl/Makefile head/math/octave-forge-gsl/Makefile head/math/orpie/Makefile head/math/p5-Algorithm-KMeans/Makefile head/math/p5-Math-GSL/Makefile head/math/pspp/Makefile head/math/py-cvxopt/Makefile head/math/py-pygsl/Makefile head/math/py-pygslodeiv2/Makefile head/math/rubygem-rb-gsl/Makefile head/misc/visp/Makefile head/science/afni/Makefile head/science/antioch/Makefile head/science/coot/Makefile head/science/erkale/Makefile head/science/fisicalab/Makefile head/science/getdp/Makefile head/science/gnudatalanguage/Makefile head/science/jdftx/Makefile head/science/kst2/Makefile head/science/meep/Makefile head/science/nest/Makefile head/science/octopus/Makefile head/science/py-mlpy/Makefile head/science/scidavis/Makefile head/science/step/Makefile Modified: head/astro/gnuastro/Makefile ============================================================================== --- head/astro/gnuastro/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/astro/gnuastro/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= gnuastro PORTVERSION= 0.10 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= astro MASTER_SITES= GNU Modified: head/astro/siril/Makefile ============================================================================== --- head/astro/siril/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/astro/siril/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= siril DISTVERSION= 0.9.10 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= astro graphics MASTER_SITES= https://free-astro.org/download/ Modified: head/audio/p5-Audio/Makefile ============================================================================== --- head/audio/p5-Audio/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/audio/p5-Audio/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= Audio PORTVERSION= 1.029 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= audio perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- Modified: head/audio/snd/Makefile ============================================================================== --- head/audio/snd/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/audio/snd/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= snd PORTVERSION= 15.7 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= audio MASTER_SITES= ftp://ccrma-ftp.stanford.edu/pub/Lisp/ \ SF Modified: head/benchmarks/flowgrind/Makefile ============================================================================== --- head/benchmarks/flowgrind/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/benchmarks/flowgrind/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -4,7 +4,7 @@ PORTNAME= flowgrind PORTVERSION= 0.8.0 DISTVERSIONPREFIX= ${PORTNAME}- -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= benchmarks MAINTAINER= dbaio@FreeBSD.org Modified: head/biology/bcftools/Makefile ============================================================================== --- head/biology/bcftools/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/biology/bcftools/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,6 +3,7 @@ PORTNAME= bcftools PORTVERSION= 1.9 +PORTREVISION= 1 CATEGORIES= biology MAINTAINER= cartwright@asu.edu Modified: head/biology/gemma/Makefile ============================================================================== --- head/biology/gemma/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/biology/gemma/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= gemma DISTVERSION= 0.98.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -25,6 +25,8 @@ CXXFLAGS+= -I${LOCALBASE}/include/eigen3 -DOPENBLAS -D LDFLAGS+= -lopenblas OPTIONS_DEFINE= EXAMPLES + +BROKEN= Conflict between math/gsl and math/cblas constant redeclarations pre-configure: @${REINPLACE_CMD} -e 's|../bin/gemma|../gemma|' ${WRKSRC}/test/*.sh Modified: head/biology/viennarna/Makefile ============================================================================== --- head/biology/viennarna/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/biology/viennarna/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= viennarna DISTVERSION= 2.4.13 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/ DISTNAME= ViennaRNA-${DISTVERSION} Modified: head/comms/gnuradio/Makefile ============================================================================== --- head/comms/gnuradio/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/comms/gnuradio/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= gnuradio PORTVERSION= 3.8.0.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= comms astro hamradio MASTER_SITES= http://gnuradio.org/releases/gnuradio/ Modified: head/editors/calligra/Makefile ============================================================================== --- head/editors/calligra/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/editors/calligra/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= calligra DISTVERSION= 3.1.0 -PORTREVISION= 25 +PORTREVISION= 26 CATEGORIES= editors kde MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION} DIST_SUBDIR= KDE/${PORTNAME} Modified: head/graphics/enblend/Makefile ============================================================================== --- head/graphics/enblend/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/graphics/enblend/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= enblend PORTVERSION= 4.2 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= graphics MASTER_SITES= SF/enblend/enblend-enfuse/enblend-enfuse-${PORTVERSION} DISTNAME= enblend-enfuse-${PORTVERSION} Modified: head/graphics/inkscape/Makefile ============================================================================== --- head/graphics/inkscape/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/graphics/inkscape/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= inkscape PORTVERSION= 0.92.4 -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= graphics gnome MASTER_SITES= https://media.inkscape.org/dl/resources/file/ Modified: head/graphics/krita/Makefile ============================================================================== --- head/graphics/krita/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/graphics/krita/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= krita DISTVERSION= 4.2.6 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= graphics kde MASTER_SITES= KDE/stable/${PORTNAME}/${DISTVERSION} DIST_SUBDIR= KDE/${PORTNAME} Modified: head/graphics/luminance-qt5/Makefile ============================================================================== --- head/graphics/luminance-qt5/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/graphics/luminance-qt5/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= luminance-hdr DISTVERSION= 2.5.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= graphics MASTER_SITES= SF/qtpfsgui/luminance/${DISTVERSION} PKGNAMESUFFIX= -qt5 Modified: head/graphics/mandelbulber/Makefile ============================================================================== --- head/graphics/mandelbulber/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/graphics/mandelbulber/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= mandelbulber DISTVERSION= 2.19 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= graphics MAINTAINER= amdmi3@FreeBSD.org Modified: head/graphics/nip2/Makefile ============================================================================== --- head/graphics/nip2/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/graphics/nip2/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= nip2 PORTVERSION= 8.7.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= graphics MASTER_SITES= https://github.com/libvips/${PORTNAME}/releases/download/v${PORTVERSION}/ Modified: head/graphics/pfstools/Makefile ============================================================================== --- head/graphics/pfstools/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/graphics/pfstools/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= pfstools DISTVERSION= 2.1.0 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= graphics MASTER_SITES= SF Modified: head/graphics/qgis-ltr/Makefile ============================================================================== --- head/graphics/qgis-ltr/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/graphics/qgis-ltr/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -4,7 +4,7 @@ PORTNAME= qgis DISTVERSIONPREFIX= final- DISTVERSION= 3_4_11 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= graphics geography PKGNAMESUFFIX= -ltr Modified: head/graphics/qgis/Makefile ============================================================================== --- head/graphics/qgis/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/graphics/qgis/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -4,6 +4,7 @@ PORTNAME= qgis DISTVERSIONPREFIX= final- DISTVERSION= 3_8_2 +PORTREVISION= 1 CATEGORIES= graphics geography MAINTAINER= rhurlin@gwdg.de Modified: head/graphics/xaos/Makefile ============================================================================== --- head/graphics/xaos/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/graphics/xaos/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= xaos PORTVERSION= 3.6 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= graphics math MASTER_SITES= SF/${PORTNAME}/XaoS/${PORTVERSION} Modified: head/lang/algol68g/Makefile ============================================================================== --- head/lang/algol68g/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/lang/algol68g/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= algol68g PORTVERSION= 2.8.4 -PORTREVISION= 7 +PORTREVISION= 8 CATEGORIES= lang MASTER_SITES= http://jmvdveer.home.xs4all.nl/ Modified: head/mail/bogofilter-kc/Makefile ============================================================================== --- head/mail/bogofilter-kc/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/mail/bogofilter-kc/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= bogofilter -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= mail PKGNAMESUFFIX= -kc Modified: head/mail/bogofilter-lmdb/Makefile ============================================================================== --- head/mail/bogofilter-lmdb/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/mail/bogofilter-lmdb/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= bogofilter -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= mail PKGNAMESUFFIX= -lmdb Modified: head/mail/bogofilter-sqlite/Makefile ============================================================================== --- head/mail/bogofilter-sqlite/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/mail/bogofilter-sqlite/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= bogofilter -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= mail PKGNAMESUFFIX= -sqlite Modified: head/mail/bogofilter-tc/Makefile ============================================================================== --- head/mail/bogofilter-tc/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/mail/bogofilter-tc/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= bogofilter -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= mail PKGNAMESUFFIX= -tc Modified: head/mail/bogofilter/Makefile ============================================================================== --- head/mail/bogofilter/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/mail/bogofilter/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= bogofilter DISTVERSION= 1.2.5 -PORTREVISION?= 0 +PORTREVISION?= 1 CATEGORIES?= mail MASTER_SITES= SF/bogofilter/bogofilter-stable/ Modified: head/math/asymptote/Makefile ============================================================================== --- head/math/asymptote/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/asymptote/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= asymptote PORTVERSION= 2.56 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MASTER_SITES= SF/${PORTNAME}/${PORTVERSION} DISTNAME= ${PORTNAME}-${PORTVERSION}.src Modified: head/math/deal.ii/Makefile ============================================================================== --- head/math/deal.ii/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/deal.ii/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= deal.II DISTVERSIONPREFIX= v DISTVERSION= 9.1.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org Modified: head/math/dieharder/Makefile ============================================================================== --- head/math/dieharder/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/dieharder/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= dieharder PORTVERSION= 3.31.1 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= math MASTER_SITES= http://www.phy.duke.edu/~rgb/General/dieharder/ LOCAL/bf Modified: head/math/fflas-ffpack/Makefile ============================================================================== --- head/math/fflas-ffpack/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/fflas-ffpack/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= fflas-ffpack PORTVERSION= 1.4.3 -PORTREVISION= 16 +PORTREVISION= 17 CATEGORIES= math MASTER_SITES= http://linalg.org/ LOCAL/bf Modified: head/math/giacxcas/Makefile ============================================================================== --- head/math/giacxcas/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/giacxcas/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,6 +3,7 @@ PORTNAME= giacxcas DISTVERSION= 1.5.0-67 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= http://www-fourier.ujf-grenoble.fr/~parisse/debian/dists/stable/main/source/:giac \ http://www-fourier.ujf-grenoble.fr/~parisse/giac/freebsd/ Modified: head/math/gsl/Makefile ============================================================================== --- head/math/gsl/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/gsl/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= gsl -PORTVERSION= 2.5 -PORTREVISION= 1 +PORTVERSION= 2.6 CATEGORIES= math MASTER_SITES= GNU Modified: head/math/gsl/distinfo ============================================================================== --- head/math/gsl/distinfo Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/gsl/distinfo Fri Oct 25 23:41:34 2019 (r515671) @@ -1,3 +1,3 @@ -TIMESTAMP = 1529158403 -SHA256 (gsl-2.5.tar.gz) = 0460ad7c2542caaddc6729762952d345374784100223995eb14d614861f2258d -SIZE (gsl-2.5.tar.gz) = 7303881 +TIMESTAMP = 1566551853 +SHA256 (gsl-2.6.tar.gz) = b782339fc7a38fe17689cb39966c4d821236c28018b6593ddb6fd59ee40786a8 +SIZE (gsl-2.6.tar.gz) = 7398548 Modified: head/math/gsl/pkg-plist ============================================================================== --- head/math/gsl/pkg-plist Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/gsl/pkg-plist Fri Oct 25 23:41:34 2019 (r515671) @@ -19,6 +19,10 @@ include/gsl/gsl_block_uint.h include/gsl/gsl_block_ulong.h include/gsl/gsl_block_ushort.h include/gsl/gsl_bspline.h +include/gsl/gsl_bst.h +include/gsl/gsl_bst_avl.h +include/gsl/gsl_bst_rb.h +include/gsl/gsl_bst_types.h include/gsl/gsl_cblas.h include/gsl/gsl_cdf.h include/gsl/gsl_chebyshev.h @@ -213,6 +217,20 @@ include/gsl/gsl_splinalg.h include/gsl/gsl_spline.h include/gsl/gsl_spline2d.h include/gsl/gsl_spmatrix.h +include/gsl/gsl_spmatrix_char.h +include/gsl/gsl_spmatrix_complex_double.h +include/gsl/gsl_spmatrix_complex_float.h +include/gsl/gsl_spmatrix_complex_long_double.h +include/gsl/gsl_spmatrix_double.h +include/gsl/gsl_spmatrix_float.h +include/gsl/gsl_spmatrix_int.h +include/gsl/gsl_spmatrix_long.h +include/gsl/gsl_spmatrix_long_double.h +include/gsl/gsl_spmatrix_short.h +include/gsl/gsl_spmatrix_uchar.h +include/gsl/gsl_spmatrix_uint.h +include/gsl/gsl_spmatrix_ulong.h +include/gsl/gsl_spmatrix_ushort.h include/gsl/gsl_statistics.h include/gsl/gsl_statistics_char.h include/gsl/gsl_statistics_double.h @@ -250,8 +268,8 @@ include/gsl/gsl_wavelet.h include/gsl/gsl_wavelet2d.h lib/libgsl.a lib/libgsl.so -lib/libgsl.so.23 -lib/libgsl.so.23.1.0 +lib/libgsl.so.25 +lib/libgsl.so.25.0.0 lib/libgslcblas.a lib/libgslcblas.so lib/libgslcblas.so.0 Modified: head/math/labplot/Makefile ============================================================================== --- head/math/labplot/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/labplot/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,6 +3,7 @@ PORTNAME= labplot PORTVERSION= 2.7.0 +PORTREVISION= 1 CATEGORIES= math kde MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION} Modified: head/math/mandelbulber2/Makefile ============================================================================== --- head/math/mandelbulber2/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/mandelbulber2/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= mandelbulber2 DISTVERSION= 2.19 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org Modified: head/math/mathgl/Makefile ============================================================================== --- head/math/mathgl/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/mathgl/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,6 +2,7 @@ PORTNAME= mathgl DISTVERSION= 2.4.4 +PORTREVISION= 1 CATEGORIES= math graphics MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${PORTVERSION}/ Modified: head/math/mcsim/Makefile ============================================================================== --- head/math/mcsim/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/mcsim/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,6 +3,7 @@ PORTNAME= mcsim PORTVERSION= 6.1.0 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= GNU Modified: head/math/ocamlgsl/Makefile ============================================================================== --- head/math/ocamlgsl/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/ocamlgsl/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -4,7 +4,7 @@ PORTNAME= ocaml-gsl DISTVERSIONPREFIX=v DISTVERSION= 1.19.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= math MAINTAINER= michipili@gmail.com Modified: head/math/octave-forge-gsl/Makefile ============================================================================== --- head/math/octave-forge-gsl/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/octave-forge-gsl/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= octave-forge-gsl PORTVERSION= 2.1.1 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= math MAINTAINER= stephen@FreeBSD.org Modified: head/math/orpie/Makefile ============================================================================== --- head/math/orpie/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/orpie/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= orpie PORTVERSION= 1.5.2 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES+= math MASTER_SITES= GENTOO http://pessimization.com/software/orpie/ Modified: head/math/p5-Algorithm-KMeans/Makefile ============================================================================== --- head/math/p5-Algorithm-KMeans/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/p5-Algorithm-KMeans/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,6 +2,7 @@ PORTNAME= Algorithm-KMeans PORTVERSION= 2.05 +PORTREVISION= 1 CATEGORIES= math perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:AVIKAK Modified: head/math/p5-Math-GSL/Makefile ============================================================================== --- head/math/p5-Math-GSL/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/p5-Math-GSL/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,6 +3,7 @@ PORTNAME= Math-GSL PORTVERSION= 0.40 +PORTREVISION= 1 CATEGORIES= math perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- @@ -22,6 +23,8 @@ TEST_DEPENDS= p5-Test-Class>=0.12:devel/p5-Test-Class USES= perl5 USE_PERL5= modbuild + +BROKEN= Does not work with gsl-2.6 post-install: ${FIND} ${STAGEDIR}${PREFIX}/${SITE_ARCH_REL}/auto/Math/GSL/ -name "*.so" -exec ${STRIP_CMD} {} + Modified: head/math/pspp/Makefile ============================================================================== --- head/math/pspp/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/pspp/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= pspp PORTVERSION= 1.2.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MASTER_SITES= GNU Modified: head/math/py-cvxopt/Makefile ============================================================================== --- head/math/py-cvxopt/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/py-cvxopt/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= cvxopt DISTVERSION= 1.2.3 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} Modified: head/math/py-pygsl/Makefile ============================================================================== --- head/math/py-pygsl/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/py-pygsl/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= pygsl PORTVERSION= 2.3.0 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= math python MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}-${PORTVERSION} PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} Modified: head/math/py-pygslodeiv2/Makefile ============================================================================== --- head/math/py-pygslodeiv2/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/py-pygslodeiv2/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= pygslodeiv2 DISTVERSION= 0.9.2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} Modified: head/math/rubygem-rb-gsl/Makefile ============================================================================== --- head/math/rubygem-rb-gsl/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/math/rubygem-rb-gsl/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= gsl PORTVERSION= 2.1.0.2 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math rubygems MASTER_SITES= RG PKGNAMEPREFIX= rubygem-rb- Modified: head/misc/visp/Makefile ============================================================================== --- head/misc/visp/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/misc/visp/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= visp DISTVERSION= 3.2.0 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= misc MASTER_SITES= http://gforge.inria.fr/frs/download.php/latestfile/475/ Modified: head/science/afni/Makefile ============================================================================== --- head/science/afni/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/afni/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= afni DISTVERSIONPREFIX= AFNI_ DISTVERSION= 19.1.20 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science biology graphics perl5 python MAINTAINER= jwb@FreeBSD.org Modified: head/science/antioch/Makefile ============================================================================== --- head/science/antioch/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/antioch/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -4,7 +4,7 @@ PORTNAME= antioch DISTVERSIONPREFIX= v DISTVERSION= 0.4.0-156 DISTVERSIONSUFFIX= -g90ffa43 -PORTREVISION= 7 +PORTREVISION= 8 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org Modified: head/science/coot/Makefile ============================================================================== --- head/science/coot/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/coot/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= coot DISTVERSION= 0.8.9.2 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MASTER_SITES= https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/${PORTNAME}/source/releases/ \ https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/${PORTNAME}/dependencies/:data Modified: head/science/erkale/Makefile ============================================================================== --- head/science/erkale/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/erkale/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= erkale DISTVERSION= g20190812 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org Modified: head/science/fisicalab/Makefile ============================================================================== --- head/science/fisicalab/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/fisicalab/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= fisicalab PORTVERSION= 0.3.3 -PORTREVISION= 10 +PORTREVISION= 11 CATEGORIES= science gnustep MASTER_SITES= SAVANNAH Modified: head/science/getdp/Makefile ============================================================================== --- head/science/getdp/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/getdp/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= getdp PORTVERSION= 3.2.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MASTER_SITES= http://www.geuz.org/getdp/src/ DISTNAME= ${PORTNAME}-${PORTVERSION}-source Modified: head/science/gnudatalanguage/Makefile ============================================================================== --- head/science/gnudatalanguage/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/gnudatalanguage/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -4,7 +4,7 @@ PORTNAME= gnudatalanguage PORTVERSION= 0.9.9 DISTVERSIONPREFIX= v -PORTREVISION= 10 +PORTREVISION= 11 CATEGORIES= science lang .if defined(BUILD_PYTHON_MODULE) PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} Modified: head/science/jdftx/Makefile ============================================================================== --- head/science/jdftx/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/jdftx/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,6 +3,7 @@ PORTNAME= jdftx DISTVERSIONPREFIX= v DISTVERSION= 1.5.0 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org Modified: head/science/kst2/Makefile ============================================================================== --- head/science/kst2/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/kst2/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= kst DISTVERSION= ${KST_VERSION}.${KST_DATE} -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MAINTAINER= makc@FreeBSD.org Modified: head/science/meep/Makefile ============================================================================== --- head/science/meep/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/meep/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= meep PORTVERSION= 1.2.1 -PORTREVISION= 19 +PORTREVISION= 20 CATEGORIES= science MASTER_SITES= http://ab-initio.mit.edu/meep/ Modified: head/science/nest/Makefile ============================================================================== --- head/science/nest/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/nest/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= nest DISTVERSIONPREFIX= v DISTVERSION= 2.18.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science biology # NEST is used in neuroscience PATCH_SITES= https://github.com/${GH_ACCOUNT}/${GH_PROJECT}/commit/ Modified: head/science/octopus/Makefile ============================================================================== --- head/science/octopus/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/octopus/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= octopus DISTVERSION= 8.4 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MASTER_SITES= http://www.tddft.org/programs/${PORTNAME}/download/${DISTVERSION}/ Modified: head/science/py-mlpy/Makefile ============================================================================== --- head/science/py-mlpy/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/py-mlpy/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -3,7 +3,7 @@ PORTNAME= mlpy PORTVERSION= 3.5.0 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= science python MASTER_SITES= SF/${PORTNAME}/${PORTNAME}%20${PORTVERSION} PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} Modified: head/science/scidavis/Makefile ============================================================================== --- head/science/scidavis/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/scidavis/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,7 +2,7 @@ PORTNAME= scidavis PORTVERSION= 2.0.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MAINTAINER= makc@FreeBSD.org Modified: head/science/step/Makefile ============================================================================== --- head/science/step/Makefile Fri Oct 25 23:37:31 2019 (r515670) +++ head/science/step/Makefile Fri Oct 25 23:41:34 2019 (r515671) @@ -2,6 +2,7 @@ PORTNAME= step DISTVERSION= ${KDE_APPLICATIONS_VERSION} +PORTREVISION= 1 CATEGORIES= science kde kde-applications MAINTAINER= kde@FreeBSD.org