From owner-svn-ports-all@freebsd.org Sat Sep 1 14:14:12 2018 Return-Path: Delivered-To: svn-ports-all@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 72A52FF0B20; Sat, 1 Sep 2018 14:14:12 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 2728E8D507; Sat, 1 Sep 2018 14:14:12 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 21D313421; Sat, 1 Sep 2018 14:14:12 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id w81EECqS073705; Sat, 1 Sep 2018 14:14:12 GMT (envelope-from jwb@FreeBSD.org) Received: (from jwb@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id w81EECEx073704; Sat, 1 Sep 2018 14:14:12 GMT (envelope-from jwb@FreeBSD.org) Message-Id: <201809011414.w81EECEx073704@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jwb set sender to jwb@FreeBSD.org using -f From: "Jason W. Bacon" Date: Sat, 1 Sep 2018 14:14:12 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r478697 - head/biology/stacks X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: head/biology/stacks X-SVN-Commit-Revision: 478697 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 01 Sep 2018 14:14:12 -0000 Author: jwb Date: Sat Sep 1 14:14:11 2018 New Revision: 478697 URL: https://svnweb.freebsd.org/changeset/ports/478697 Log: biology/stacks: Enable OpenMP (oversight in previous commit) Upgrade to latest release will follow, after testing Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D16973 Modified: head/biology/stacks/Makefile Modified: head/biology/stacks/Makefile ============================================================================== --- head/biology/stacks/Makefile Sat Sep 1 14:10:04 2018 (r478696) +++ head/biology/stacks/Makefile Sat Sep 1 14:14:11 2018 (r478697) @@ -2,7 +2,7 @@ PORTNAME= stacks DISTVERSION= 1.48 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/ @@ -12,7 +12,7 @@ COMMENT= Software pipeline for building loci from shor LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE -USES= compiler:c++11-lang gmake python shebangfix +USES= compiler:openmp gmake python shebangfix SHEBANG_FILES= scripts/*.pl scripts/*.py GNU_CONFIGURE= yes