From owner-freebsd-ports-bugs@FreeBSD.ORG Mon Oct 13 12:40:06 2008 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 64F261065696 for ; Mon, 13 Oct 2008 12:40:06 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id 3A4FA8FC2A for ; Mon, 13 Oct 2008 12:40:06 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.3/8.14.3) with ESMTP id m9DCe66Q042552 for ; Mon, 13 Oct 2008 12:40:06 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.3/8.14.3/Submit) id m9DCe6g4042551; Mon, 13 Oct 2008 12:40:06 GMT (envelope-from gnats) Resent-Date: Mon, 13 Oct 2008 12:40:06 GMT Resent-Message-Id: <200810131240.m9DCe6g4042551@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Christian Sturm Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id A3B52106569C for ; Mon, 13 Oct 2008 12:39:59 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id 91F168FC24 for ; Mon, 13 Oct 2008 12:39:59 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.3/8.14.3) with ESMTP id m9DCdx4p034687 for ; Mon, 13 Oct 2008 12:39:59 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.3/8.14.3/Submit) id m9DCdxRA034686; Mon, 13 Oct 2008 12:39:59 GMT (envelope-from nobody) Message-Id: <200810131239.m9DCdxRA034686@www.freebsd.org> Date: Mon, 13 Oct 2008 12:39:59 GMT From: Christian Sturm To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/128057: Update biology/avida to 2.8.1 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 13 Oct 2008 12:40:06 -0000 >Number: 128057 >Category: ports >Synopsis: Update biology/avida to 2.8.1 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Mon Oct 13 12:40:05 UTC 2008 >Closed-Date: >Last-Modified: >Originator: Christian Sturm >Release: 7-stable >Organization: >Environment: >Description: I updated the unmaintained port biology/avida to recent stable version 2.8.1. While building I get: [ 57%] Building CXX object CMakeFiles/avidacore.dir/source/main/cTaskLib.o /usr/ports/biology/avida/work/avida-src-2.8.1/source/main/cTaskLib.cc: In member function 'double cTaskLib::Task_Log2(cTaskContext&) const': /usr/ports/biology/avida/work/avida-src-2.8.1/source/main/cTaskLib.cc:2507: error: 'log2' was not declared in this scope *** Error code 1 A partial patch/diff is attached. >How-To-Repeat: >Fix: Patch attached with submission follows: ? avida-cvs-diff Index: Makefile =================================================================== RCS file: /home/ncvs/ports/biology/avida/Makefile,v retrieving revision 1.23 diff -u -p -r1.23 Makefile --- Makefile 3 Sep 2008 02:57:44 -0000 1.23 +++ Makefile 13 Oct 2008 12:34:36 -0000 @@ -6,11 +6,11 @@ # PORTNAME= avida -PORTVERSION= 2.4.3 +PORTVERSION= 2.8.1 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_SOURCEFORGE} MASTER_SITE_SUBDIR= ${PORTNAME} -DISTNAME= ${PORTNAME}-src-${PORTVERSION} +DISTNAME= ${PORTNAME}-${PORTVERSION}-src MAINTAINER= ports@FreeBSD.org COMMENT= Avida is an auto-adaptive genetic system designed for ALife research @@ -24,7 +24,7 @@ CMAKE_ARGS= -DPROJECT_BINARY_DIR=${WRKSR -DAVD_UNIT_TESTS:BOOL=OFF\ -DCMAKE_BUILD_TYPE:STRING=Release -WRKSRC= ${WRKDIR}/${PORTNAME} +WRKSRC= ${WRKDIR}/${PORTNAME}-src-${PORTVERSION} do-build: @(cd ${BUILD_WRKSRC}; \ Index: distinfo =================================================================== RCS file: /home/ncvs/ports/biology/avida/distinfo,v retrieving revision 1.5 diff -u -p -r1.5 distinfo --- distinfo 8 Jul 2006 03:36:36 -0000 1.5 +++ distinfo 13 Oct 2008 12:34:36 -0000 @@ -1,3 +1,3 @@ -MD5 (avida-src-2.4.3.tar.gz) = 44c3f1df0fe5d62a08cb0a64dc9c5ac2 -SHA256 (avida-src-2.4.3.tar.gz) = 4a883138d9da57c99defe521de96e7851f453e1a003c978a6dbb178c8a51ba11 -SIZE (avida-src-2.4.3.tar.gz) = 1725948 +MD5 (avida-2.8.1-src.tar.gz) = 99d9405921a23df1813e34c96106cd47 +SHA256 (avida-2.8.1-src.tar.gz) = 554a82081f550e49f795ecda34d6e19a91239e8dc500b6590f46d08839179ef7 +SIZE (avida-2.8.1-src.tar.gz) = 1609168 >Release-Note: >Audit-Trail: >Unformatted: