From owner-svn-ports-all@freebsd.org Fri Aug 28 11:17:14 2020 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id BDBFF3D5868; Fri, 28 Aug 2020 11:17:14 +0000 (UTC) (envelope-from tcberner@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4BdHB24Yyjz4QG4; Fri, 28 Aug 2020 11:17:14 +0000 (UTC) (envelope-from tcberner@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 7FF231419A; Fri, 28 Aug 2020 11:17:14 +0000 (UTC) (envelope-from tcberner@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 07SBHEna060312; Fri, 28 Aug 2020 11:17:14 GMT (envelope-from tcberner@FreeBSD.org) Received: (from tcberner@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 07SBHEEV060311; Fri, 28 Aug 2020 11:17:14 GMT (envelope-from tcberner@FreeBSD.org) Message-Id: <202008281117.07SBHEEV060311@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: tcberner set sender to tcberner@FreeBSD.org using -f From: "Tobias C. Berner" Date: Fri, 28 Aug 2020 11:17:14 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r546721 - head/biology/bwa X-SVN-Group: ports-head X-SVN-Commit-Author: tcberner X-SVN-Commit-Paths: head/biology/bwa X-SVN-Commit-Revision: 546721 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 28 Aug 2020 11:17:14 -0000 Author: tcberner Date: Fri Aug 28 11:17:13 2020 New Revision: 546721 URL: https://svnweb.freebsd.org/changeset/ports/546721 Log: biology/bwa: fix build on recent current Obtained from: https://github.com/lh3/bwa/commit/2a1ae7b6f34a96ea25be007ac9d91e57e9d32284 Modified: head/biology/bwa/Makefile head/biology/bwa/distinfo Modified: head/biology/bwa/Makefile ============================================================================== --- head/biology/bwa/Makefile Fri Aug 28 11:11:58 2020 (r546720) +++ head/biology/bwa/Makefile Fri Aug 28 11:17:13 2020 (r546721) @@ -5,6 +5,9 @@ PORTVERSION= 0.7.17 DISTVERSIONPREFIX=v CATEGORIES= biology +PATCH_SITES= https://github.com/lh3/bwa/commit/ +PATCHFILES= 2a1ae7b6f34a96ea25be007ac9d91e57e9d32284.patch:-p1 + MAINTAINER= jwb@FreeBSD.org COMMENT= Burrows-Wheeler sequence aligner Modified: head/biology/bwa/distinfo ============================================================================== --- head/biology/bwa/distinfo Fri Aug 28 11:11:58 2020 (r546720) +++ head/biology/bwa/distinfo Fri Aug 28 11:17:13 2020 (r546721) @@ -1,3 +1,5 @@ -TIMESTAMP = 1511844744 +TIMESTAMP = 1598613295 SHA256 (lh3-bwa-v0.7.17_GH0.tar.gz) = 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd SIZE (lh3-bwa-v0.7.17_GH0.tar.gz) = 232593 +SHA256 (2a1ae7b6f34a96ea25be007ac9d91e57e9d32284.patch) = 15216a79759a2390bda4a4684af34ff3108f63519d2ec3935754507f3c008da0 +SIZE (2a1ae7b6f34a96ea25be007ac9d91e57e9d32284.patch) = 709