Date: Sun, 24 Mar 2019 21:20:24 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r496783 - head/biology/py-cutadapt Message-ID: <201903242120.x2OLKOCd089970@repo.freebsd.org>
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Author: jwb Date: Sun Mar 24 21:20:24 2019 New Revision: 496783 URL: https://svnweb.freebsd.org/changeset/ports/496783 Log: biology/py-cutadapt: Upgrade to 2.1 Add do-test target Modified: head/biology/py-cutadapt/Makefile head/biology/py-cutadapt/distinfo Modified: head/biology/py-cutadapt/Makefile ============================================================================== --- head/biology/py-cutadapt/Makefile Sun Mar 24 20:53:48 2019 (r496782) +++ head/biology/py-cutadapt/Makefile Sun Mar 24 21:20:24 2019 (r496783) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= cutadapt -PORTVERSION= 1.18 +DISTVERSION= 2.1 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -12,13 +12,19 @@ COMMENT= Trim adapters from high-throughput sequencing LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=0.3.2:archivers/py-xopen@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}bz2file>=0.98:archivers/py-bz2file@${PY_FLAVOR} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=0.5.0:archivers/py-xopen@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}dnaio>=0.3:biology/py-dnaio@${PY_FLAVOR} +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pytest-timeout>0:devel/py-pytest-timeout@${PY_FLAVOR} USES= python:3.4+ -USE_PYTHON= autoplist concurrent distutils +USE_PYTHON= autoplist concurrent cython distutils post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/cutadapt/*.so + +do-test: + @cd ${WRKSRC} && ${PYTHON_CMD} -m pytest .include <bsd.port.mk> Modified: head/biology/py-cutadapt/distinfo ============================================================================== --- head/biology/py-cutadapt/distinfo Sun Mar 24 20:53:48 2019 (r496782) +++ head/biology/py-cutadapt/distinfo Sun Mar 24 21:20:24 2019 (r496783) @@ -1,3 +1,3 @@ -TIMESTAMP = 1536508727 -SHA256 (cutadapt-1.18.tar.gz) = 17aabf9b19d09a426d96030a83ad003c97b26dba9d45bf5570d33088fcd533f9 -SIZE (cutadapt-1.18.tar.gz) = 342050 +TIMESTAMP = 1553346146 +SHA256 (cutadapt-2.1.tar.gz) = 09fd222a27cc1eeb571633f2bd54442ea9d4ff668ef1f475fd9d5253a7d315ef +SIZE (cutadapt-2.1.tar.gz) = 264993
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