Date: Tue, 9 Apr 2019 07:06:03 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv7-default][science/py-mlpy] Failed for py27-mlpy-3.5.0_7 in configure Message-ID: <201904090706.x3976315002293@beefy16.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: wen@FreeBSD.org Last committer: amdmi3@FreeBSD.org Ident: $FreeBSD: head/science/py-mlpy/Makefile 497970 2019-04-05 16:54:42Z amdmi3 $ Log URL: http://beefy16.nyi.freebsd.org/data/head-armv7-default/p498219_s345783/logs/py27-mlpy-3.5.0_7.log Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p498219_s345783 Log: =>> Building science/py-mlpy build started at Tue Apr 9 07:05:33 UTC 2019 port directory: /usr/ports/science/py-mlpy package name: py27-mlpy-3.5.0_7 building for: FreeBSD head-armv7-default-job-03 13.0-CURRENT FreeBSD 13.0-CURRENT 1300017 arm maintained by: wen@FreeBSD.org Makefile ident: $FreeBSD: head/science/py-mlpy/Makefile 497970 2019-04-05 16:54:42Z amdmi3 $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300009 Jail OSVERSION: 1300017 Job Id: 03 !!! Jail is newer than host. (Jail: 1300017, Host: 1300009) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300017 UNAME_v=FreeBSD 13.0-CURRENT 1300017 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/head-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py27 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py27 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- wen@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-mlpy/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-mlpy/work-py27 HOME=/wrkdirs/usr/ports/science/py-mlpy/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-mlpy/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-mlpy/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-mlpy/work-py27 HOME=/wrkdirs/usr/ports/science/py-mlpy/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-mlpy/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="i nstall -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd13 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/mlpy" EXAMPLESDIR="share/examples/mlpy" DATADIR="share/mlpy" WWWDIR="www/mlpy" ETCDIR="etc/mlpy" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mlpy DOCSDIR=/usr/local/share/doc/mlpy EXAMPLESDIR=/usr/local/share/examples/mlpy WWWDIR=/usr/local/www/mlpy ETCDIR=/usr/local/etc/mlpy --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300017 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py27-mlpy-3.5.0_7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-armv7-default-job-03] Installing pkg-1.10.5_5... [head-armv7-default-job-03] Extracting pkg-1.10.5_5: .......... done ===> py27-mlpy-3.5.0_7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-mlpy-3.5.0_7 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by py27-mlpy-3.5.0_7 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by py27-mlpy-3.5.0_7 for building => SHA256 Checksum OK for mlpy-3.5.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by py27-mlpy-3.5.0_7 for building ===> Extracting for py27-mlpy-3.5.0_7 => SHA256 Checksum OK for mlpy-3.5.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py27-mlpy-3.5.0_7 =========================================================================== =======================<phase: build-depends >============================ ===> py27-mlpy-3.5.0_7 depends on package: py27-numpy>0 - not found ===> Installing existing package /packages/All/py27-numpy-1.16.1,1.txz [head-armv7-default-job-03] Installing py27-numpy-1.16.1,1... [head-armv7-default-job-03] `-- Installing blas-3.5.0_5... [head-armv7-default-job-03] | `-- Installing gcc8-8.3.0_1... [head-armv7-default-job-03] | | `-- Installing binutils-2.32,1... [head-armv7-default-job-03] | | `-- Installing gettext-runtime-0.19.8.1_2... [head-armv7-default-job-03] | | | `-- Installing indexinfo-0.3.1... [head-armv7-default-job-03] | | | `-- Extracting indexinfo-0.3.1: .... done [head-armv7-default-job-03] | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done [head-armv7-default-job-03] | | `-- Extracting binutils-2.32,1: .......... done [head-armv7-default-job-03] | | `-- Installing gmp-6.1.2_1... [head-armv7-default-job-03] | | `-- Extracting gmp-6.1.2_1: .......... done [head-armv7-default-job-03] | | `-- Installing mpc-1.1.0_2... [head-armv7-default-job-03] | | `-- Installing mpfr-4.0.2... [head-armv7-default-job-03] | | `-- Extracting mpfr-4.0.2: .......... done [head-armv7-default-job-03] | | `-- Extracting mpc-1.1.0_2: ......... done [head-armv7-default-job-03] | `-- Extracting gcc8-8.3.0_1: .......... done [head-armv7-default-job-03] `-- Extracting blas-3.5.0_5: ....... done [head-armv7-default-job-03] `-- Installing cblas-1.0_10... [head-armv7-default-job-03] `-- Extracting cblas-1.0_10: ......... done [head-armv7-default-job-03] `-- Installing lapack-3.5.0_6... [head-armv7-default-job-03] `-- Extracting lapack-3.5.0_6: .......... done [head-armv7-default-job-03] `-- Installing py27-setuptools-40.8.0... [head-armv7-default-job-03] | `-- Installing python27-2.7.16... [head-armv7-default-job-03] | | `-- Installing libffi-3.2.1_3... [head-armv7-default-job-03] | | `-- Extracting libffi-3.2.1_3: .......... done [head-armv7-default-job-03] | | `-- Installing readline-7.0.5... [head-armv7-default-job-03] | | `-- Extracting readline-7.0.5: .......... done [head-armv7-default-job-03] | `-- Extracting python27-2.7.16: .......... done [head-armv7-default-job-03] `-- Extracting py27-setuptools-40.8.0: .......... done [head-armv7-default-job-03] `-- Installing suitesparse-5.2.0_2... [head-armv7-default-job-03] | `-- Installing metis-5.1.0_7... [head-armv7-default-job-03] | `-- Extracting metis-5.1.0_7: .......... done [head-armv7-default-job-03] | `-- Installing openblas-0.2.20_7,1... [head-armv7-default-job-03] | `-- Extracting openblas-0.2.20_7,1: ......... done [head-armv7-default-job-03] `-- Extracting suitesparse-5.2.0_2: .......... done [head-armv7-default-job-03] Extracting py27-numpy-1.16.1,1: .......... done Message from gcc8-8.3.0_1: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_10: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.16: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py27-mlpy-3.5.0_7 depends on package: py27-numpy>0 - found ===> Returning to build of py27-mlpy-3.5.0_7 ===> py27-mlpy-3.5.0_7 depends on executable: cython-2.7 - not found ===> Installing existing package /packages/All/py27-cython-0.29.txz [head-armv7-default-job-03] Installing py27-cython-0.29... [head-armv7-default-job-03] Extracting py27-cython-0.29: .......... done ===> py27-mlpy-3.5.0_7 depends on executable: cython-2.7 - found ===> Returning to build of py27-mlpy-3.5.0_7 ===> py27-mlpy-3.5.0_7 depends on package: py27-setuptools>0 - found ===> py27-mlpy-3.5.0_7 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =======================<phase: lib-depends >============================ ===> py27-mlpy-3.5.0_7 depends on shared library: libgsl.so - not found ===> Installing existing package /packages/All/gsl-2.5_1.txz [head-armv7-default-job-03] Installing gsl-2.5_1... [head-armv7-default-job-03] Extracting gsl-2.5_1: .......... done ===> py27-mlpy-3.5.0_7 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> Returning to build of py27-mlpy-3.5.0_7 =========================================================================== =======================<phase: configure >============================ ===> Configuring for py27-mlpy-3.5.0_7 Traceback (most recent call last): File "<string>", line 1, in <module> File "setup.py", line 6, in <module> import numpy File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in <module> from . import core File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 47, in <module> raise ImportError(msg) ImportError: IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! Importing the multiarray numpy extension module failed. Most likely you are trying to import a failed build of numpy. Here is how to proceed: - If you're working with a numpy git repository, try `git clean -xdf` (removes all files not under version control) and rebuild numpy. - If you are simply trying to use the numpy version that you have installed: your installation is broken - please reinstall numpy. - If you have already reinstalled and that did not fix the problem, then: 1. Check that you are using the Python you expect (you're using /usr/local/bin/python2.7), and that you have no directories in your PATH or PYTHONPATH that can interfere with the Python and numpy versions you're trying to use. 2. If (1) looks fine, you can open a new issue at https://github.com/numpy/numpy/issues. Please include details on: - how you installed Python - how you installed numpy - your operating system - whether or not you have multiple versions of Python installed - if you built from source, your compiler versions and ideally a build log Note: this error has many possible causes, so please don't comment on an existing issue about this - open a new one instead. Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5" *** Error code 1 Stop. make: stopped in /usr/ports/science/py-mlpy
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