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From: Jan Beich <jbeich@FreeBSD.org>
Date: Mon, 27 Feb 2017 14:09:25 +0000 (UTC)
To: ports-committers@freebsd.org, svn-ports-all@freebsd.org,
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Subject: svn commit: r434941 - in head/biology/plinkseq: . files
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Author: jbeich
Date: Mon Feb 27 14:09:25 2017
New Revision: 434941
URL: https://svnweb.freebsd.org/changeset/ports/434941

Log:
  biology/plinkseq: unbreak with clang 4.0
  
  PR:		216618
  Submitted by:	Jason Bacon <bacon4000@gmail.com> (maintainer)

Added:
  head/biology/plinkseq/files/
  head/biology/plinkseq/files/patch-sources_plinkseq_sources_lib_r8lib.cpp   (contents, props changed)
Modified:
  head/biology/plinkseq/Makefile   (contents, props changed)

Modified: head/biology/plinkseq/Makefile
==============================================================================
--- head/biology/plinkseq/Makefile	Mon Feb 27 14:08:30 2017	(r434940)
+++ head/biology/plinkseq/Makefile	Mon Feb 27 14:09:25 2017	(r434941)
@@ -3,6 +3,7 @@
 
 PORTNAME=	plinkseq
 PORTVERSION=	0.10
+PORTREVISION=	1
 CATEGORIES=	biology science
 MASTER_SITES=	http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/
 # Default DISTNAME is correct, so leave it alone.

Added: head/biology/plinkseq/files/patch-sources_plinkseq_sources_lib_r8lib.cpp
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/plinkseq/files/patch-sources_plinkseq_sources_lib_r8lib.cpp	Mon Feb 27 14:09:25 2017	(r434941)
@@ -0,0 +1,11 @@
+--- sources/plinkseq/sources/lib/r8lib.cpp.orig	2014-07-09 14:37:16 UTC
++++ sources/plinkseq/sources/lib/r8lib.cpp
+@@ -31828,7 +31828,7 @@ void r8vec_index_sorted_range ( int n, d
+   if ( r_hi < r[indx[*i_hi]] )
+   {
+     *i_hi = *i_hi - 1;
+-    if ( i_hi < 0 )
++    if ( *i_hi < 0 )
+     {
+       *i_lo = *i_hi + 1;
+     }