From nobody Fri Aug 11 20:44:48 2023 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4RMwlN715Fz4mRyN; Fri, 11 Aug 2023 20:44:48 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4RMwlN6Nxpz3Vrf; Fri, 11 Aug 2023 20:44:48 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1691786688; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=3u6LBCQVdGqBMikmGGErSRg+NTytyYyChX3kRu29IRc=; b=e0580W3FghapeisDuO8ndJSEEq90SPZs0eBFImNSe62nld4CD0Q2TuY73L79F5InAQVCHk U2huN6PWq0cf/cWMkAlrMJ7x0yaSYsNNuuslEl5cjLGFFvjMzm1L5dvQ6eqbocCh7orXVP u1dxWc/j1HXnne9KCwVp3bGx2sssjlHgq1wFkHTXQ/reZK6UUbcRpAOxr4geKX5pb2fDci 9oVo7WHBhtwxlAyd3bAeGWE2PAJz+EJ2xphlZAi46cc0zJXclaYkZLWh//WfiHens6qg/P auZCnuKt9sq3EsvHIKrw2z4fm8MAFQB4GjzZyDJ47ItLsNnMf4t6EnSs0TmJUA== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1691786688; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=3u6LBCQVdGqBMikmGGErSRg+NTytyYyChX3kRu29IRc=; b=V2jCgCZggXTIuv49px6Larr9meIva7x5ON9A4jGihMldRzQ04HawuaWK9rDod4jQzVNUZi Hkiknqx/iYSt9ufT8W2ek5qhy90w8Ml/HbMa+EEFMbj4bqefNKjqoNa8ZrYMhxlsZ1g/vf Ue6RFp256Hq4oxUpoqzrLyma7eqkkcMYmD9du7/U3TLMqhCVZFaKtzEvcZG7qN6s5QDXmN o7PQECflAXqrCQ+xi3fgNjonL7EeEluRPzjxqeYCpY9eZVQvntfsPVzwEVNcf6PG5rF+Lc o0FsyGqLayyJ7SKz9wTDcIoW8FK4QtQfGlyHDADtBcHzQJ/5tEDqFoezfDms1Q== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1691786688; a=rsa-sha256; cv=none; b=pqzCj9DjA0gqNZ6jaFX+Ng98lbSu1utNL0dXhlywSaKVyhhDtMJmJhWVRUBDMBiJj5E4v9 vbiHutajKgRtL44UP/hhK63PaWvWgoxrEJA5OS0h+NICQ895zj4HM/J/fh9EEZc6jdqJC4 k1FafPkdsd5bSc6sjfRpsx7M5FIXZsyO+12ToAGjrY90HfzXRZ2pdPNkwcqLHbA4zlW3CA DTd5g+fkpG5tRhYAp5Yeqqci3k+9Jn4Cj0WsQKvzJLJ3ODK43rwDfB3M5Wzwa5qzQ1X56P SqTI9nYzrYA1B1Xa/dX/1Zcsf5grtQ5g+uP9l7bq7A+5gsMyRtn769u4DhGO1Q== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4RMwlN5RQ5zst7; Fri, 11 Aug 2023 20:44:48 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 37BKimfx055219; Fri, 11 Aug 2023 20:44:48 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 37BKimwi055216; Fri, 11 Aug 2023 20:44:48 GMT (envelope-from git) Date: Fri, 11 Aug 2023 20:44:48 GMT Message-Id: <202308112044.37BKimwi055216@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: e9b6ad4f597e - main - biology/biolibc-tools: Update to 0.1.4.9 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: e9b6ad4f597e4afa869bbc2c0b6e1ba2f411e263 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=e9b6ad4f597e4afa869bbc2c0b6e1ba2f411e263 commit e9b6ad4f597e4afa869bbc2c0b6e1ba2f411e263 Author: Jason W. Bacon AuthorDate: 2023-08-11 20:40:49 +0000 Commit: Jason W. Bacon CommitDate: 2023-08-11 20:40:49 +0000 biology/biolibc-tools: Update to 0.1.4.9 Update for biolibc GFF3 API changes --- biology/biolibc-tools/Makefile | 4 ++-- biology/biolibc-tools/distinfo | 6 +++--- biology/biolibc-tools/pkg-plist | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/biology/biolibc-tools/Makefile b/biology/biolibc-tools/Makefile index f70c1f5b9930..670d37553f1b 100644 --- a/biology/biolibc-tools/Makefile +++ b/biology/biolibc-tools/Makefile @@ -1,6 +1,6 @@ PORTNAME= biolibc-tools -DISTVERSION= 0.1.4-6 -DISTVERSIONSUFFIX= -gb221258 +DISTVERSION= 0.1.4-9 +DISTVERSIONSUFFIX= -g6d96043 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/biolibc-tools/distinfo b/biology/biolibc-tools/distinfo index 02b0171dd621..c6c721748e18 100644 --- a/biology/biolibc-tools/distinfo +++ b/biology/biolibc-tools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1686344581 -SHA256 (auerlab-biolibc-tools-0.1.4-6-gb221258_GH0.tar.gz) = bd18e5354b13d75f066c2487914b7f577fe28f41c749fe99c45485365c700f4a -SIZE (auerlab-biolibc-tools-0.1.4-6-gb221258_GH0.tar.gz) = 29354 +TIMESTAMP = 1691169052 +SHA256 (auerlab-biolibc-tools-0.1.4-9-g6d96043_GH0.tar.gz) = 42f525268c22db49a894dcf98cd446af5745fa5ace9255e55566a9c9cdf800bd +SIZE (auerlab-biolibc-tools-0.1.4-9-g6d96043_GH0.tar.gz) = 29381 diff --git a/biology/biolibc-tools/pkg-plist b/biology/biolibc-tools/pkg-plist index 4325c450f37b..a59c9b6d3982 100644 --- a/biology/biolibc-tools/pkg-plist +++ b/biology/biolibc-tools/pkg-plist @@ -9,7 +9,7 @@ libexec/biolibc-tools/fastx-derep libexec/biolibc-tools/fastx-stats libexec/biolibc-tools/fastx2tsv libexec/biolibc-tools/find-orfs -libexec/biolibc-tools/gff2bed +libexec/biolibc-tools/gff3-to-bed libexec/biolibc-tools/uniq-seqs.awk libexec/biolibc-tools/vcf-downsample libexec/biolibc-tools/vcf-search @@ -23,7 +23,7 @@ man/man1/blt-fastx-derep.1.gz man/man1/blt-fastx-stats.1.gz man/man1/blt-fastx2tsv.1.gz man/man1/blt-find-orfs.1.gz -man/man1/blt-gff2bed.1.gz +man/man1/blt-gff3-to-bed.1.gz man/man1/blt-vcf-downsample.1.gz man/man1/blt-vcf-search.1.gz man/man1/blt.1.gz