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Date:      Fri, 26 Sep 2014 06:37:35 GMT
From:      pkg-fallout@FreeBSD.org
To:        h2+fbsdports@fsfe.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - 10amd64-quarterly][biology/ugene] Failed for ugene-1.13.1 in checksum
Message-ID:  <201409260637.s8Q6bZ37097810@beefy2.isc.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     h2+fbsdports@fsfe.org
Last committer: danfe@FreeBSD.org
Ident:          $FreeBSD: branches/2014Q2/biology/ugene/Makefile 347340 2014-03-07 07:39:20Z danfe $
Log URL:        http://beefy2.isc.freebsd.org/data/10amd64-quarterly/2014-09-26_01h33m07s/logs/ugene-1.13.1.log
Build URL:      http://beefy2.isc.freebsd.org/build.html?mastername=10amd64-quarterly&build=2014-09-26_01h33m07s
Log:

====>> Building biology/ugene
build started at Fri Sep 26 06:37:32 UTC 2014
port directory: /usr/ports/biology/ugene
building for: FreeBSD 10amd64-quarterly-job-21 10.0-RELEASE-p7 FreeBSD 10.0-RELEASE-p7 amd64
maintained by: h2+fbsdports@fsfe.org
Makefile ident:      $FreeBSD: branches/2014Q2/biology/ugene/Makefile 347340 2014-03-07 07:39:20Z danfe $
Poudriere version: 3.1-pre
Host OSVERSION: 1100027
Jail OSVERSION: 1000510

---Begin Environment---
OSVERSION=1000510
UNAME_v=FreeBSD 10.0-RELEASE-p7
UNAME_r=10.0-RELEASE-p7
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=screen
MASTERMNT=/usr/local/poudriere/data/.m/10amd64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=ugene-1.13.1
OLDPWD=/root
PWD=/usr/local/poudriere/data/.m/10amd64-quarterly/ref/.p/pool
MASTERNAME=10amd64-quarterly
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for ugene-1.13.1:
     DOCS=on: Install official UGENE documentation (PDF)
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--with-qt-includes=/usr/local/include/qt4  --with-qt-libraries=/usr/local/lib/qt4  --with-extra-includes=/usr/local/include  --with-extra-libs=/usr/local/lib
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work  HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" QTDIR="/usr/local" QMAKE="/usr/local/bin/qmake-qt4"  MOC="/usr/local/bin/moc-qt4" RCC="/usr/local/bin/rcc" UIC="/usr/local/bin/uic-qt4"  QMAKESPEC="/usr/local/share/qt4/mkspecs/freebsd-$(ccver="$(c++ --version)"; case "$ccver" in *clang*) echo clang ;; *) echo g++ ;; esac)" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work  HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work  HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work  HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing -std=c++11"  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -o root -g wheel -m 555"  BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  BSD_INSTALL_SCRIPT="install  -o root -g wheel -m 555"  BSD_INSTALL_DATA="install  -o root -g wheel -m 444"  BSD_INSTALL_MAN="install  -o root -g wheel -m 444"
--End MAKE_ENV--

--PLIST_SUB--
NOX64="@comment
"
OSREL=10.0
PREFIX=%D
LOCALBASE=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
PORTDATA=""
LIB32DIR=lib
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
DOCSDIR="share/ugene/manuals"
EXAMPLESDIR="share/examples/ugene"
DATADIR="share/ugene"
WWWDIR="www/ugene"
ETCDIR="etc/ugene"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/ugene
DOCSDIR=/usr/local/share/ugene/manuals
EXAMPLESDIR=/usr/local/share/examples/ugene
WWWDIR=/usr/local/www/ugene
ETCDIR=/usr/local/etc/ugene
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
#WITH_PKGNG=devel
# clean-restricted ran via poudriere.conf NO_RESTRICTED
#NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ugene-1.13.1 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.2.7_4.txz
Installing pkg-1.2.7_4... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of ugene-1.13.1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.13.1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.13.1 for building
=> SHA256 Checksum OK for ugene/ugene-1.13.1.tar.gz.
=> SHA256 Checksum mismatch for ugene/QueryDesigner_UserManual.pdf.
=> SHA256 Checksum mismatch for ugene/UniproUGENE_UserManual.pdf.
=> SHA256 Checksum mismatch for ugene/WorkflowDesigner_UserManual.pdf.
===>  Refetch for 1 more times files: ugene/QueryDesigner_UserManual.pdf ugene/UniproUGENE_UserManual.pdf ugene/WorkflowDesigner_UserManual.pdf 
===>  License GPLv2 accepted by the user
=> QueryDesigner_UserManual.pdf doesn't seem to exist in /portdistfiles/ugene.
=> Attempting to fetch http://ugene.unipro.ru/downloads/QueryDesigner_UserManual.pdf
fetch: http://ugene.unipro.ru/downloads/QueryDesigner_UserManual.pdf: size mismatch: expected 1306825, actual 824781
=> Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/ugene/QueryDesigner_UserManual.pdf
fetch: http://distcache.FreeBSD.org/ports-distfiles/ugene/QueryDesigner_UserManual.pdf: size mismatch: expected 1306825, actual 824781
=> Couldn't fetch it - please try to retrieve this
=> port manually into /portdistfiles/ugene and try again.
*** Error code 1

Stop.
make[1]: stopped in /usr/ports/biology/ugene
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ugene



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