Date: Fri, 29 Dec 2023 16:18:45 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: bfb9d85323b9 - main - math/py-hmmlearn: Unsupervised learning of Hidden Markov Models Message-ID: <202312291618.3BTGIjnR085554@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=bfb9d85323b9c27d1c329a9230be3cf678763349 commit bfb9d85323b9c27d1c329a9230be3cf678763349 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2023-12-29 16:18:01 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2023-12-29 16:18:43 +0000 math/py-hmmlearn: Unsupervised learning of Hidden Markov Models hmmlearn is a set of algorithms for unsupervised learning and inference of Hidden Markov Models. For supervised learning learning of HMMs and similar models see seqlearn. --- math/Makefile | 1 + math/py-hmmlearn/Makefile | 37 +++++++++++++++++++++++++++++++++++++ math/py-hmmlearn/distinfo | 3 +++ math/py-hmmlearn/pkg-descr | 3 +++ 4 files changed, 44 insertions(+) diff --git a/math/Makefile b/math/Makefile index 89953b27a37c..744598647931 100644 --- a/math/Makefile +++ b/math/Makefile @@ -951,6 +951,7 @@ SUBDIR += py-hdmedians SUBDIR += py-hepstats SUBDIR += py-heyoka + SUBDIR += py-hmmlearn SUBDIR += py-igraph SUBDIR += py-iminuit SUBDIR += py-intspan diff --git a/math/py-hmmlearn/Makefile b/math/py-hmmlearn/Makefile new file mode 100644 index 000000000000..3baef7e19c21 --- /dev/null +++ b/math/py-hmmlearn/Makefile @@ -0,0 +1,37 @@ +PORTNAME= hmmlearn +DISTVERSION= 0.3.0 +CATEGORIES= math python +MASTER_SITES= PYPI +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Unsupervised learning and inference of Hidden Markov Models +WWW= https://github.com/hmmlearn/hmmlearn + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +BUILD_DEPENDS= wheel-${PYTHON_VER}:devel/py-wheel@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}setuptools_scm>=3.4.3:devel/py-setuptools_scm@${PY_FLAVOR} \ + ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}scipy>=0.19:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.16:science/py-scikit-learn@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pybind11>=0:devel/py-pybind11@${PY_FLAVOR} +RUN_DEPENDS= ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}scipy>=0.19:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.16:science/py-scikit-learn@${PY_FLAVOR} + +USES= python +USE_PYTHON= autoplist pep517 pytest + +post-stage: + @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/hmmlearn/_hmmc.cpython-39.so + +# 2023-12-29: Tests currently fail due to known upstream issues +do-test: + # setup.py builds directly to prefix by default, so we need to build + # again within the project for pytest to work + @(cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} setup.py develop) + (cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} pytest-${PYTHON_VER} --capture=no) + +.include <bsd.port.mk> diff --git a/math/py-hmmlearn/distinfo b/math/py-hmmlearn/distinfo new file mode 100644 index 000000000000..0e1fdc68387f --- /dev/null +++ b/math/py-hmmlearn/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1703354335 +SHA256 (hmmlearn-0.3.0.tar.gz) = d13a91ea3695df881465e3d36132d7eef4e84d483f4ba538a4b46e24b5ea100f +SIZE (hmmlearn-0.3.0.tar.gz) = 77889 diff --git a/math/py-hmmlearn/pkg-descr b/math/py-hmmlearn/pkg-descr new file mode 100644 index 000000000000..1a2d7271b8c8 --- /dev/null +++ b/math/py-hmmlearn/pkg-descr @@ -0,0 +1,3 @@ +hmmlearn is a set of algorithms for unsupervised learning and inference +of Hidden Markov Models. For supervised learning learning of HMMs and +similar models see seqlearn.
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