Date: Tue, 28 Feb 2017 02:21:17 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 110mips-quarterly][biology/libsbml] Failed for libsbml-5.13.0 in configure Message-ID: <201702280221.v1S2LHM8049848@beefy14.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: mat@FreeBSD.org Ident: $FreeBSD: branches/2017Q1/biology/libsbml/Makefile 425174 2016-11-02 22:45:14Z mat $ Log URL: http://beefy14.nyi.freebsd.org/data/110mips-quarterly/434978/logs/libsbml-5.13.0.log Build URL: http://beefy14.nyi.freebsd.org/build.html?mastername=110mips-quarterly&build=434978 Log: ====>> Building biology/libsbml build started at Tue Feb 28 02:20:50 UTC 2017 port directory: /usr/ports/biology/libsbml building for: FreeBSD 110mips-quarterly-job-15 11.0-RELEASE-p8 FreeBSD 11.0-RELEASE-p8 r314125 mips maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: branches/2017Q1/biology/libsbml/Makefile 425174 2016-11-02 22:45:14Z mat $ Poudriere version: 3.1.14 Host OSVERSION: 1200020 Jail OSVERSION: 1100122 Job Id: 15 ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips UNAME_m=mips ABI_FILE=/usr/lib/crt1.o OSVERSION=1100122 UNAME_v=FreeBSD 11.0-RELEASE-p8 r314125 UNAME_r=11.0-RELEASE-p8 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110mips-quarterly/ref QEMU_EMULATING=1 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=libsbml-5.13.0 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/110mips-quarterly/ref/.p/pool MASTERNAME=110mips-quarterly SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for libsbml-5.13.0: EXAMPLES=on: Build and/or install examples PYTHON=off: Python bindings or support RUBY=off: Ruby bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/libsbml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/libsbml/work HOME=/wrkdirs/usr/ports/biology/libsbml/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/libsbml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/libsbml/work HOME=/wrkdirs/usr/ports/biology/libsbml/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-DLIBICONV_PLUG" LDFLAGS=" -L/usr/lib" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing -DLIBICONV_PLUG" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTVERSION=5.13.0 EXAMPLES="" NO_EXAMPLES="@comment " PYTHON="@comment " NO_PYTHON="" RUBY="@comment " NO_RUBY="" CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/libsbml" EXAMPLESDIR="share/examples/libsbml" DATADIR="share/libsbml" WWWDIR="www/libsbml" ETCDIR="etc/libsbml" --End PLIST_SUB-- --SUB_LIST-- EXAMPLES="" NO_EXAMPLES="@comment " PYTHON="@comment " NO_PYTHON="" RUBY="@comment " NO_RUBY="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libsbml DOCSDIR=/usr/local/share/doc/libsbml EXAMPLESDIR=/usr/local/share/examples/libsbml WWWDIR=/usr/local/www/libsbml ETCDIR=/usr/local/etc/libsbml --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MACHINE=mips MACHINE_ARCH=mips ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=mips CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.0 OSVERSION=1100122 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native\|linux _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ _OSRELEASE=11.0-RELEASE-p8 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) 9223372032559808512 file size (512-blocks, -f) 18014398501093376 data seg size (kbytes, -d) 562949953421312 stack size (kbytes, -s) 35184372088832 core file size (512-blocks, -c) 18014398501093376 max memory size (kbytes, -m) 9007199250546688 locked memory (kbytes, -l) 9007199250546688 max user processes (-u) 386542761672704 open files (-n) 4398046511104 virtual mem size (kbytes, -v) 9007199250546688 swap limit (kbytes, -w) 9007199250546688 socket buffer size (bytes, -b) 9223372032559808512 pseudo-terminals (-p) 9223372032559808512 kqueues (-k) 9223372032559808512 umtx shared locks (-o) 9223372032559808512 --End resource limits-- =======================<phase: check-sanity >============================ ===> NOTICE: The libsbml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License LGPL21 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> libsbml-5.13.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.9.4_1.txz [110mips-quarterly-job-15] Installing pkg-1.9.4_1... [110mips-quarterly-job-15] Extracting pkg-1.9.4_1: .......... done ===> libsbml-5.13.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libsbml-5.13.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> NOTICE: The libsbml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by libsbml-5.13.0 for building =========================================================================== =======================<phase: checksum >============================ ===> NOTICE: The libsbml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by libsbml-5.13.0 for building => SHA256 Checksum OK for libSBML-5.13.0-core-src.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> NOTICE: The libsbml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by libsbml-5.13.0 for building ===> Extracting for libsbml-5.13.0 => SHA256 Checksum OK for libSBML-5.13.0-core-src.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for libsbml-5.13.0 =========================================================================== =======================<phase: build-depends >============================ ===> libsbml-5.13.0 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.7.1.txz [110mips-quarterly-job-15] Installing cmake-3.7.1... [110mips-quarterly-job-15] `-- Installing expat-2.2.0_1... [110mips-quarterly-job-15] `-- Extracting expat-2.2.0_1: .......... done [110mips-quarterly-job-15] `-- Installing cmake-modules-3.7.1... [110mips-quarterly-job-15] `-- Extracting cmake-modules-3.7.1: .......... done [110mips-quarterly-job-15] `-- Installing curl-7.53.0... [110mips-quarterly-job-15] | `-- Installing libnghttp2-1.18.0... [110mips-quarterly-job-15] | `-- Extracting libnghttp2-1.18.0: .......... done [110mips-quarterly-job-15] | `-- Installing ca_root_nss-3.29.1... [110mips-quarterly-job-15] | `-- Extracting ca_root_nss-3.29.1: ........ done [110mips-quarterly-job-15] `-- Extracting curl-7.53.0: .......... done [110mips-quarterly-job-15] `-- Installing libarchive-3.2.2,1... [110mips-quarterly-job-15] | `-- Installing liblz4-131... [110mips-quarterly-job-15] | `-- Extracting liblz4-131: .......... done [110mips-quarterly-job-15] | `-- Installing lzo2-2.09... [110mips-quarterly-job-15] | `-- Extracting lzo2-2.09: .......... done [110mips-quarterly-job-15] `-- Extracting libarchive-3.2.2,1: .......... done [110mips-quarterly-job-15] `-- Installing jsoncpp-1.8.0_1... [110mips-quarterly-job-15] `-- Extracting jsoncpp-1.8.0_1: .......... done [110mips-quarterly-job-15] `-- Installing libuv-1.10.1... [110mips-quarterly-job-15] `-- Extracting libuv-1.10.1: .......... done [110mips-quarterly-job-15] Extracting cmake-3.7.1: .......... done Message from ca_root_nss-3.29.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> libsbml-5.13.0 depends on file: /usr/local/bin/cmake - found ===> Returning to build of libsbml-5.13.0 =========================================================================== =======================<phase: lib-depends >============================ ===> libsbml-5.13.0 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.9.4.txz [110mips-quarterly-job-15] Installing libxml2-2.9.4... [110mips-quarterly-job-15] Extracting libxml2-2.9.4: .......... done ===> libsbml-5.13.0 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of libsbml-5.13.0 =========================================================================== =======================<phase: configure >============================ ===> Configuring for libsbml-5.13.0 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.13.0/config/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.13.0/configure ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/libsbml/work/.build -- The C compiler identification is GNU 4.2.1 -- The CXX compiler identification is GNU 4.2.1 -- Check for working C compiler: /nxb-bin/usr/bin/cc CMake Error: Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTC_d59c1/fast" -- Check for working C compiler: /nxb-bin/usr/bin/cc -- broken CMake Error at /usr/local/share/cmake/Modules/CMakeTestCCompiler.cmake:51 (message): The C compiler "/nxb-bin/usr/bin/cc" is not able to compile a simple test program. It fails with the following output: Change Dir: /wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/make" "cmTC_d59c1/fast" /nxb-bin/usr/bin/make -f CMakeFiles/cmTC_d59c1.dir/build.make CMakeFiles/cmTC_d59c1.dir/build Building C object CMakeFiles/cmTC_d59c1.dir/testCCompiler.c.o /nxb-bin/usr/bin/cc -O2 -pipe -G0 -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing -o CMakeFiles/cmTC_d59c1.dir/testCCompiler.c.o -c /wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeTmp/testCCompiler.c Linking C executable cmTC_d59c1 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_d59c1.dir/link.txt --verbose=1 /nxb-bin/usr/bin/cc -O2 -pipe -G0 -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing CMakeFiles/cmTC_d59c1.dir/testCCompiler.c.o -o cmTC_d59c1 Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTC_d59c1/fast" CMake will not be able to correctly generate this project. Call Stack (most recent call first): CMakeLists.txt:35 (project) -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeError.log". *** Error code 1 Stop. make: stopped in /usr/ports/biology/libsbml
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