Date: Sun, 23 Oct 2011 06:17:03 GMT From: David Naylor <naylor.b.david@gmail.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/161918: [patch] update math/R-cran-car from 2.0-10 to 2.0-11 Message-ID: <201110230617.p9N6H3RI084391@red.freebsd.org> Resent-Message-ID: <201110230620.p9N6K9Om089897@freefall.freebsd.org>
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>Number: 161918
>Category: ports
>Synopsis: [patch] update math/R-cran-car from 2.0-10 to 2.0-11
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: maintainer-update
>Submitter-Id: current-users
>Arrival-Date: Sun Oct 23 06:20:09 UTC 2011
>Closed-Date:
>Last-Modified:
>Originator: David Naylor
>Release:
>Organization:
Private
>Environment:
>Description:
Changes to Version 2.0-11
o the arguments to deltaMethod have changed, with parameterPrefix replaced by parameterNames. See documentation for useage.
o deltaMethod methods for lmList, nlsList, and mer objects have been added. The syntax for the multinom method has been improved.
o the 'layout' argument is used in several graphical functions to deterine the layout of multiple graphs within the same graphical window. Setting layout=NA in these functions suppresses this behavior and the user can set the layout outside the function (suggested by Steve Milborrow)
o compareCoefs() works with 'mer' objects created by lme4
o avPlot() now will optionally plot concentration ellipses; avPlot() and avPlots() invisibly return coordinates (suggested by Michael Friendly, with contributed code).
o dataEllipse() now allows combination of add=FALSE and plot.points=FALSE (suggested by Michael Friendly, with contributed code); the ellipse functions have acquired a "draw" argument, which can be used to suppress graphical output (suggestion of Benoit Bruneau).
o ellipse(), confidenceEllipse(), and dataEllipse() return coordinates invisibly (suggested by Michael Friendly, with contributed code).
o fixed bug in printed representation of hypotheses with numbers starting with "-1" or "+1" (e.g., "-10") by linearHypothesis() (reported by Vincent Arel-Bundock).
o local version of fixef() to avoid lme4/nlme conflicts that surfaced in some situations with Anova().
o changed order of columns in ANOVA tables for mixed models to make them consistent with other models.
>How-To-Repeat:
>Fix:
Patch attached with submission follows:
diff -u /usr/ports/math/R-cran-car/Makefile R-cran-car/Makefile
--- /usr/ports/math/R-cran-car/Makefile 2011-10-12 04:14:27.000000000 +0200
+++ R-cran-car/Makefile 2011-10-23 08:10:58.000000000 +0200
@@ -6,8 +6,7 @@
#
PORTNAME= car
-DISTVERSION= 2.0-10
-PORTREVISION= 2
+DISTVERSION= 2.0-11
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff -u /usr/ports/math/R-cran-car/distinfo R-cran-car/distinfo
--- /usr/ports/math/R-cran-car/distinfo 2011-05-09 04:52:50.000000000 +0200
+++ R-cran-car/distinfo 2011-10-23 08:14:24.000000000 +0200
@@ -1,2 +1,2 @@
-SHA256 (car_2.0-10.tar.gz) = 70d53d25f6e242b0216791fba3fb12b860f1ef8455fb976ebd768d6b71a7a763
-SIZE (car_2.0-10.tar.gz) = 359388
+SHA256 (car_2.0-11.tar.gz) = 27def3bea41854d8aa272102b6e8987156a02df98b49b3ea44408b83269fd8a2
+SIZE (car_2.0-11.tar.gz) = 318150
>Release-Note:
>Audit-Trail:
>Unformatted:
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