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Date:      Sun, 25 Apr 2021 02:44:22 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - main-arm64-default][biology/paml] Failed for paml-4.9j in stage
Message-ID:  <202104250244.13P2iMUd000180@ampere2.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jrm@FreeBSD.org
Last committer: @FreeBSD.org
Ident:          Makefile ident: 
Log URL:        http://ampere2.nyi.freebsd.org/data/main-arm64-default/pab50f8435a78_s6993187a8c/logs/paml-4.9j.log
Build URL:      http://ampere2.nyi.freebsd.org/build.html?mastername=main-arm64-default&build=pab50f8435a78_s6993187a8c
Log:

=>> Building biology/paml
build started at Sun Apr 25 02:40:10 UTC 2021
port directory: /usr/ports/biology/paml
package name: paml-4.9j
building for: FreeBSD main-arm64-default-job-03 14.0-CURRENT FreeBSD 14.0-CURRENT 1400010 arm64
maintained by: jrm@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1300139
Jail OSVERSION: 1400010
Job Id: 03




!!! Jail is newer than host. (Jail: 1400010, Host: 1300139) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-8-gaf08dbda
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PWD=/usr/local/poudriere/data/.m/main-arm64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
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POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for paml-4.9j:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
jrm@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/paml/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/paml/work  HOME=/wrkdirs/usr/ports/biology/paml/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/paml/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/paml/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/paml/work  HOME=/wrkdirs/usr/ports/biology/paml/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/paml/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/paml"  EXAMPLESDIR="share/examples/paml"  DATADIR="share/paml"  WWWDIR="www/paml"  ETCDIR="etc/paml"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/paml DOCSDIR=/usr/local/share/doc/paml EXAMPLESDIR=/usr/local/share/examples/paml  WWWDIR=/usr/local/www/paml ETCDIR=/usr/local/etc/paml
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
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CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
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CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
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ARCH=aarch64
OPSYS=FreeBSD
_OSRELEASE=14.0-CURRENT
OSREL=14.0
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PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  1048576
stack size              (kbytes, -s)  1048576
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   paml-4.9j depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.16.3.txz
[main-arm64-default-job-03] Installing pkg-1.16.3...
[main-arm64-default-job-03] Extracting pkg-1.16.3: .......... done
===>   paml-4.9j depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of paml-4.9j
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by paml-4.9j for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by paml-4.9j for building
=> SHA256 Checksum OK for paml4.9j.tgz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by paml-4.9j for building
===>  Extracting for paml-4.9j
=> SHA256 Checksum OK for paml4.9j.tgz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for paml-4.9j
===>   Converting DOS text files to UNIX text files
===>  Applying FreeBSD patches for paml-4.9j from /usr/ports/biology/paml/files
===========================================================================
=======================<phase: build-depends  >============================
===>   paml-4.9j depends on package: gmake>=4.3 - not found
===>   Installing existing package /packages/All/gmake-4.3_2.txz
[main-arm64-default-job-03] Installing gmake-4.3_2...
[main-arm64-default-job-03] `-- Installing gettext-runtime-0.21...
<snip>
int      sprintf(char * __restrict, const char * __restrict, ...);
                                  ^
evolver.c:186:54: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
               for (i = 0; i < com.ns; i++)  sprintf(com.spname[i], "S%d", i + 1);
                                                     ^~~~~~~~~~~~~
/usr/include/stdio.h:286:31: note: passing argument to parameter here
int      sprintf(char * __restrict, const char * __restrict, ...);
                                  ^
evolver.c:299:26: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
         if ((p = strstr(com.spname[i], key))
                         ^~~~~~~~~~~~~
/usr/include/string.h:120:26: note: passing argument to parameter here
char    *strstr(const char *, const char *) __pure;
                            ^
evolver.c:634:18: warning: passing 'unsigned char [512]' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
   fdaa = gfopen(com.daafile, "r");
                 ^~~~~~~~~~~
./paml.h:209:20: note: passing argument to parameter 'filename' here
FILE *gfopen(char *filename, char *mode);
                   ^
evolver.c:670:19: warning: initializing 'unsigned char *' with an expression of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
   unsigned char *pch = (com.seqtype == 2 ? AAs : BASEs);
                  ^     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
evolver.c:672:34: warning: passing 'unsigned char [12]' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
   FILE *frootseq = (FILE*)fopen(rootseqf, "r");
                                 ^~~~~~~~
/usr/include/stdio.h:259:36: note: passing argument to parameter here
FILE    *fopen(const char * __restrict, const char * __restrict);
                                      ^
evolver.c:827:15: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
      sprintf(com.spname[i], "S%d", i + 1);
              ^~~~~~~~~~~~~
/usr/include/stdio.h:286:31: note: passing argument to parameter here
int      sprintf(char * __restrict, const char * __restrict, ...);
                                  ^
evolver.c:1062:15: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
      MakeSeq(com.z[tree.root], com.ls);
              ^~~~~~~~~~~~~~~~
evolver.c:662:19: note: passing argument to parameter 'z' here
void MakeSeq(char*z, int ls)
                  ^
23 warnings generated.
In file included from evolver.c:66:
./treesub.c:86:7: warning: assigning to 'unsigned char *' from 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
   zt = (char*)malloc(com.ls*lpatt * sizeof(char));
      ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./treesub.c:105:24: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
            k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
                       ^~~~~~~~~~~~
/usr/include/string.h:82:25: note: passing argument to parameter here
int      strcmp(const char *, const char *) __pure;
                            ^
In file included from evolver.c:66:
./treesub.c:105:38: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
            k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
                                     ^~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:82:39: note: passing argument to parameter here
int      strcmp(const char *, const char *) __pure;
                                          ^
In file included from evolver.c:66:
./treesub.c:143:21: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
         k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
                    ^~~~~~~~~~~~
/usr/include/string.h:82:25: note: passing argument to parameter here
int      strcmp(const char *, const char *) __pure;
                            ^
In file included from evolver.c:66:
./treesub.c:143:35: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
         k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
                                  ^~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:82:39: note: passing argument to parameter here
int      strcmp(const char *, const char *) __pure;
                                          ^
In file included from evolver.c:66:
./treesub.c:256:7: warning: assigning to 'unsigned char *' from 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
   zt = (char*)malloc(npatt0*lpatt * sizeof(char));
      ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./treesub.c:280:24: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
            k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
                       ^~~~~~~~~~~~
/usr/include/string.h:82:25: note: passing argument to parameter here
int      strcmp(const char *, const char *) __pure;
                            ^
In file included from evolver.c:66:
./treesub.c:280:38: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
            k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
                                     ^~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:82:39: note: passing argument to parameter here
int      strcmp(const char *, const char *) __pure;
                                          ^
In file included from evolver.c:66:
./treesub.c:313:21: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
         k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
                    ^~~~~~~~~~~~
/usr/include/string.h:82:25: note: passing argument to parameter here
int      strcmp(const char *, const char *) __pure;
                            ^
In file included from evolver.c:66:
./treesub.c:313:35: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
         k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
                                  ^~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:82:39: note: passing argument to parameter here
int      strcmp(const char *, const char *) __pure;
                                          ^
In file included from evolver.c:66:
./treesub.c:2973:19: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if (line[i] == EOF)
          ~~~~~~~ ^  ~~~
./treesub.c:3106:37: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
                  if (!strcmp(line, com.spname[i])) break;
                                    ^~~~~~~~~~~~~
/usr/include/string.h:82:39: note: passing argument to parameter here
int      strcmp(const char *, const char *) __pure;
                                          ^
In file included from evolver.c:66:
./treesub.c:3115:23: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
               strcpy(com.spname[cnode = tip++], line);
                      ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:84:31: note: passing argument to parameter here
char    *strcpy(char * __restrict, const char * __restrict);
                                 ^
In file included from evolver.c:67:
./treespace.c:131:18: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
         sprintf(com.spname[i], "%d", i+1);
                 ^~~~~~~~~~~~~
/usr/include/stdio.h:286:31: note: passing argument to parameter here
int      sprintf(char * __restrict, const char * __restrict, ...);
                                  ^
evolver.c:121:21: warning: assigning to 'unsigned char *' from 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
      com.spname[i] = (char*)malloc(LSPNAME * sizeof(char*));
                    ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
evolver.c:184:54: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
               for (i = 0; i < com.ns; i++)  sprintf(com.spname[i], "%c", (i < 26 ? 'A' + i : 'a' + i - 26));
                                                     ^~~~~~~~~~~~~
/usr/include/stdio.h:286:31: note: passing argument to parameter here
int      sprintf(char * __restrict, const char * __restrict, ...);
                                  ^
evolver.c:186:54: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
               for (i = 0; i < com.ns; i++)  sprintf(com.spname[i], "S%d", i + 1);
                                                     ^~~~~~~~~~~~~
/usr/include/stdio.h:286:31: note: passing argument to parameter here
int      sprintf(char * __restrict, const char * __restrict, ...);
                                  ^
evolver.c:299:26: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
         if ((p = strstr(com.spname[i], key))
                         ^~~~~~~~~~~~~
/usr/include/string.h:120:26: note: passing argument to parameter here
char    *strstr(const char *, const char *) __pure;
                            ^
evolver.c:634:18: warning: passing 'unsigned char [512]' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
   fdaa = gfopen(com.daafile, "r");
                 ^~~~~~~~~~~
./paml.h:209:20: note: passing argument to parameter 'filename' here
FILE *gfopen(char *filename, char *mode);
                   ^
evolver.c:670:19: warning: initializing 'unsigned char *' with an expression of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
   unsigned char *pch = (com.seqtype == 2 ? AAs : BASEs);
                  ^     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
evolver.c:672:34: warning: passing 'unsigned char [12]' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
   FILE *frootseq = (FILE*)fopen(rootseqf, "r");
                                 ^~~~~~~~
/usr/include/stdio.h:259:36: note: passing argument to parameter here
FILE    *fopen(const char * __restrict, const char * __restrict);
                                      ^
evolver.c:827:15: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
      sprintf(com.spname[i], "S%d", i + 1);
              ^~~~~~~~~~~~~
/usr/include/stdio.h:286:31: note: passing argument to parameter here
int      sprintf(char * __restrict, const char * __restrict, ...);
                                  ^
evolver.c:1062:15: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
      MakeSeq(com.z[tree.root], com.ls);
              ^~~~~~~~~~~~~~~~
evolver.c:662:19: note: passing argument to parameter 'z' here
void MakeSeq(char*z, int ls)
                  ^
23 warnings generated.
===========================================================================
=======================<phase: run-depends    >============================
===========================================================================
=======================<phase: stage          >============================
===>  Staging for paml-4.9j
===>   Generating temporary packing list
install  -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/baseml /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install  -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/basemlg /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install  -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/chi2 /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install  -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/codeml /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install  -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/evolver /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install  -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/evolverNSbranches /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install  -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/evolverNSbranchsites /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install  -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/evolverNSsites /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install  -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/pamp /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install  -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/yn00 /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install  -m 0644 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/doc/* /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/share/doc/paml
install  -m 0644 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/README.txt /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/share/doc/paml
(cd /wrkdirs/usr/ports/biology/paml/work/paml4.9j && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) &&  /usr/bin/find -Ed $1 $3 \(   -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} +  -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE "dat Technical"  /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/share/examples/paml)
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/paml



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