Date: Wed, 26 Jan 2022 23:51:39 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: e2641662d618 - main - biology/ncbi-cxx-toolkit: Update 25.2.0 -> 26.0.1 Message-ID: <202201262351.20QNpdsr074817@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=e2641662d618fe725aa4539a3a2a0830383114ba commit e2641662d618fe725aa4539a3a2a0830383114ba Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2022-01-26 23:38:41 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2022-01-26 23:51:37 +0000 biology/ncbi-cxx-toolkit: Update 25.2.0 -> 26.0.1 --- biology/ncbi-cxx-toolkit/Makefile | 19 ++++++++----------- biology/ncbi-cxx-toolkit/distinfo | 6 +++--- 2 files changed, 11 insertions(+), 14 deletions(-) diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile index 40f24bc66bed..2fc85bad7d51 100644 --- a/biology/ncbi-cxx-toolkit/Makefile +++ b/biology/ncbi-cxx-toolkit/Makefile @@ -1,8 +1,7 @@ PORTNAME= ncbi-cxx-toolkit -DISTVERSION= 25_2_0 +DISTVERSIONPREFIX= release- +DISTVERSION= 26.0.1 CATEGORIES= biology science devel -MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2021/Sep_30_2021/ -DISTNAME= ncbi_cxx--${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= NCBI C++ Toolkit @@ -15,9 +14,13 @@ LIB_DEPENDS= libcdd.so:math/cddlib \ libpcre.so:devel/pcre RUN_DEPENDS= bash:shells/bash -USES= compiler:c++14-lang gmake mysql perl5 python shebangfix ssl xorg +USES= compiler:c++17-lang gmake mysql perl5 python shebangfix ssl xorg USE_XORG= x11 xpm +USE_GITHUB= yes +GH_ACCOUNT= ncbi +GH_PROJECT= ${PORTNAME}-public + SHEBANG_FILES= src/app/blast/get_species_taxids.sh SHEBANG_GLOB= *.pl *.py @@ -31,18 +34,12 @@ post-install: # strip @${FIND} ${STAGEDIR}${PREFIX}/bin -type f | ${GREP} -v -E '\.(sh|py|pl)$$' | ${XARGS} ${STRIP_CMD} @${FIND} ${STAGEDIR}${PREFIX}/lib -name "*.so" | ${XARGS} ${STRIP_CMD} - # remove an empty directory - #@${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg - @${RMDIR} \ - ${STAGEDIR}${PREFIX}/include/ncbi-tools++/algo/ms/formats \ - ${STAGEDIR}${PREFIX}/include/ncbi-tools++/algo/ms - # remove the conflicting file + # remove the conflicting files @${RM} \ ${STAGEDIR}${PREFIX}/lib/libcdd.so \ ${STAGEDIR}${PREFIX}/lib/liblmdb.so # autoplist: thousands of files @cd ${STAGEDIR}${PREFIX} && \ - ${RMDIR} include/ncbi-tools++/algo/blast/bl2api include/ncbi-tools++/objtools/test && \ ${FIND} * -type f -or -type l >> ${TMPPLIST} .include <bsd.port.mk> diff --git a/biology/ncbi-cxx-toolkit/distinfo b/biology/ncbi-cxx-toolkit/distinfo index 68a69535957e..af7c94b0fa38 100644 --- a/biology/ncbi-cxx-toolkit/distinfo +++ b/biology/ncbi-cxx-toolkit/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1633054572 -SHA256 (ncbi_cxx--25_2_0.tar.gz) = 9f824a92750e64e7b9be98d82b84414ab4f7e5d73392dadbb87c94ff5ccf9111 -SIZE (ncbi_cxx--25_2_0.tar.gz) = 95671156 +TIMESTAMP = 1643225773 +SHA256 (ncbi-ncbi-cxx-toolkit-public-release-26.0.1_GH0.tar.gz) = aba79da5c8d0407ffc92b7831f4f8f8a8096a15e47a016ada81b6568f9d280cc +SIZE (ncbi-ncbi-cxx-toolkit-public-release-26.0.1_GH0.tar.gz) = 103933829
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