Date: Sun, 10 Oct 2021 05:21:38 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 7c0a02b1bf8e - main - science/py-PyNE: New port: PyNE: The Nuclear Engineering Toolkit Message-ID: <202110100521.19A5LcbB082930@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=7c0a02b1bf8eed6ccf4a0543fb6eb5c4b18eb424 commit 7c0a02b1bf8eed6ccf4a0543fb6eb5c4b18eb424 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2021-10-10 04:45:26 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2021-10-10 05:21:33 +0000 science/py-PyNE: New port: PyNE: The Nuclear Engineering Toolkit --- science/Makefile | 1 + science/py-PyNE/Makefile | 60 +++++ science/py-PyNE/distinfo | 11 + .../files/patch-cmake_SetupSubPyInstall.cmake.in | 12 + science/py-PyNE/pkg-descr | 6 + science/py-PyNE/pkg-plist | 252 +++++++++++++++++++++ 6 files changed, 342 insertions(+) diff --git a/science/Makefile b/science/Makefile index 3019d3e97cd6..b1371a5909d0 100644 --- a/science/Makefile +++ b/science/Makefile @@ -233,6 +233,7 @@ SUBDIR += py-OpenFermion SUBDIR += py-PubChemPy SUBDIR += py-PyFR + SUBDIR += py-PyNE SUBDIR += py-SimpleSpectral SUBDIR += py-abipy SUBDIR += py-access diff --git a/science/py-PyNE/Makefile b/science/py-PyNE/Makefile new file mode 100644 index 000000000000..70882d74548d --- /dev/null +++ b/science/py-PyNE/Makefile @@ -0,0 +1,60 @@ +PORTNAME= PyNE +DISTVERSION= 0.7.5 +CATEGORIES= science +MASTER_SITES= http://raw.githubusercontent.com/pyne/data/master/:decay \ + http://raw.githubusercontent.com/pyne/data/master/:cram \ + http://raw.githubusercontent.com/pyne/data/master/:dlc \ + http://raw.githubusercontent.com/pyne/data/master/:clc +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} +DISTFILES= decay.tar.gz:decay \ + cram.tar.gz:cram \ + decay-linux-clang.tar.gz:dlc \ + cram-linux-clang.tar.gz:clc +DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} +EXTRACT_ONLY= ${DISTNAME}.tar.gz + +MAINTAINER= yuri@FreeBSD.org +COMMENT= PyNE: The Nuclear Engineering Toolkit + +LICENSE= BSD2CLAUSE +LICENSE_FILE= ${WRKSRC}/license.txt + +PY_DEPENDS= ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}tables>0:devel/py-tables@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}yaml>0:devel/py-yaml@${PY_FLAVOR} +BUILD_DEPENDS= cmake:devel/cmake \ + ${PY_DEPENDS} +LIB_DEPENDS= libhdf5.so:science/hdf5 \ + libsz.so:science/szip +RUN_DEPENDS= ${PY_DEPENDS} + +USES= compiler:c++17-lang fortran python:3.7+ +USE_PYTHON= distutils cython flavors + +USE_GITHUB= yes +GH_ACCOUNT= pyne +GH_PROJECT= pyne + +MAKE_ENV= DESTDIR=${STAGEDIR} +FFLAGS+= -fallow-argument-mismatch + +PYDISTUTILS_BUILDARGS= --slow # this chooses slow compilation of sources from {decay,cram}.tar.gz + # over incompatible pre-compiled assembly from {decay,cram}-linux-clang.tar.gz + +post-extract: +.for f in decay.tar.gz cram.tar.gz decay-linux-clang.tar.gz cram-linux-clang.tar.gz + @${CP} ${DISTDIR}/${DIST_SUBDIR}/${f} ${WRKSRC}/src +.endfor + +do-install: + # install + cd ${INSTALL_WRKSRC} && \ + ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYDISTUTILS_SETUP} ${PYDISTUTILS_INSTALL_TARGET} + # strip + ${STRIP_CMD} \ + ${STAGEDIR}${LOCALBASE}/lib/lib*.so \ + ${STAGEDIR}${PYTHON_SITELIBDIR}/pyne/*.so \ + ${STAGEDIR}${PYTHON_SITELIBDIR}/pyne/xs/models.so + +.include <bsd.port.mk> diff --git a/science/py-PyNE/distinfo b/science/py-PyNE/distinfo new file mode 100644 index 000000000000..fc8c2dadf0b6 --- /dev/null +++ b/science/py-PyNE/distinfo @@ -0,0 +1,11 @@ +TIMESTAMP = 1633733586 +SHA256 (PyNE-0.7.5/decay.tar.gz) = aa1aa69cb84685731eb234c046c56f9167a0bcc9686ccd5437f62186ac9bd441 +SIZE (PyNE-0.7.5/decay.tar.gz) = 8012492 +SHA256 (PyNE-0.7.5/cram.tar.gz) = 5ea1443226234787e0b8ef7f1d4c9cb0a6846b9da00bc843557051ad74e4a2f5 +SIZE (PyNE-0.7.5/cram.tar.gz) = 2110526 +SHA256 (PyNE-0.7.5/decay-linux-clang.tar.gz) = 6fa05231e7fbfe5994e9a6705131bdcac2fc5845e362d3607e96c46ed418a0db +SIZE (PyNE-0.7.5/decay-linux-clang.tar.gz) = 18904467 +SHA256 (PyNE-0.7.5/cram-linux-clang.tar.gz) = 0a7a04b5268db91fea7bec75dbefe3ec23036f9e250aacc6fb353d17d8e84538 +SIZE (PyNE-0.7.5/cram-linux-clang.tar.gz) = 20477898 +SHA256 (PyNE-0.7.5/pyne-pyne-0.7.5_GH0.tar.gz) = 80143d5e232b89ffd89121363c0e1e615acc28c26f5d7682521eb9baf98311c4 +SIZE (PyNE-0.7.5/pyne-pyne-0.7.5_GH0.tar.gz) = 9262728 diff --git a/science/py-PyNE/files/patch-cmake_SetupSubPyInstall.cmake.in b/science/py-PyNE/files/patch-cmake_SetupSubPyInstall.cmake.in new file mode 100644 index 000000000000..e70e7905f014 --- /dev/null +++ b/science/py-PyNE/files/patch-cmake_SetupSubPyInstall.cmake.in @@ -0,0 +1,12 @@ +- make 'install' DESTDIR-aware + +--- cmake/SetupSubPyInstall.cmake.in.orig 2021-10-09 05:02:12 UTC ++++ cmake/SetupSubPyInstall.cmake.in +@@ -9,6 +9,7 @@ message(" CMAKE_INSTALL_PREFIX: ${CMAKE_INSTALL_PREFI + message(" CMAKE_CURRENT_BINARY_DIR: ${CMAKE_CURRENT_BINARY_DIR}") + execute_process(COMMAND ${PYTHON_EXECUTABLE} setup_sub.py install + "--prefix=${CMAKE_INSTALL_PREFIX}" ++ "--root=$ENV{DESTDIR}" + WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} + RESULT_VARIABLE res_var) + if(NOT "${res_var}" STREQUAL "0") diff --git a/science/py-PyNE/pkg-descr b/science/py-PyNE/pkg-descr new file mode 100644 index 000000000000..0a0ecb6320fa --- /dev/null +++ b/science/py-PyNE/pkg-descr @@ -0,0 +1,6 @@ +PyNE is a suite of tools to aid in computational nuclear science & engineering. +PyNE seeks to provide native implementations of common nuclear algorithms, as +well as Python bindings and I/O support for other industry standard nuclear +codes. + +WWW: https://pyne.io/ diff --git a/science/py-PyNE/pkg-plist b/science/py-PyNE/pkg-plist new file mode 100644 index 000000000000..0e0196d6cbb8 --- /dev/null +++ b/science/py-PyNE/pkg-plist @@ -0,0 +1,252 @@ +bin/aceviewer +bin/activation_responses.py +bin/expand_tags.py +bin/gtcadis.py +bin/meshtal_to_mesh +bin/nuc_data_make +bin/ptrac_to_hdf5 +bin/r2s.py +bin/ssw_combine.py +bin/tape9 +include/pyne/_atomic_data.h +include/pyne/_decay.h +include/pyne/atomic_data.h +include/pyne/cram.h +include/pyne/cram.hpp +include/pyne/dagmc_bridge.h +include/pyne/data.h 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