Date: Sat, 22 Jul 2023 08:30:24 +0000 From: bugzilla-noreply@freebsd.org To: bugs@FreeBSD.org Subject: [Bug 272652] clang16 crashes on the science/rdkit port Message-ID: <bug-272652-227@https.bugs.freebsd.org/bugzilla/>
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D272652 Bug ID: 272652 Summary: clang16 crashes on the science/rdkit port Product: Base System Version: CURRENT Hardware: Any OS: Any Status: New Severity: Affects Only Me Priority: --- Component: misc Assignee: bugs@FreeBSD.org Reporter: yuri@freebsd.org Assertion failed: (VDecl->isLinkageValid()), function DeduceVariableDeclarationType, file /usr/local/poudriere/jails/main-amd64/usr/src/contrib/llvm-project/clang/li= b/Sema/SemaDecl.cpp, line 12705. PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include = the crash backtrace, preprocessed source, and associated run script. Stack dump: 0. Program arguments: /usr/bin/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/External/Ri= ngFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -fstac k-protector-strong -fno-strict-aliasing -DNDEBUG -std=3Dgnu++17 -fPIC -pthr= ead -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code/GraphMol= /Canon.cpp 1.=20=20=20=20=20 /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code/GraphMol= /Canon.cpp:84:2: current parser token ';' 2.=20=20=20=20=20 /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code/GraphMol= /Canon.cpp:21:1: parsing namespace 'RDKit' 3.=20=20=20=20=20 /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code/GraphMol= /Canon.cpp:22:1: parsing namespace 'RDKit::Canon' #0 0x0000000005828c31 (/usr/bin/c+++0x5828c31) #1 0x0000000005826fb5 (/usr/bin/c+++0x5826fb5) #2 0x00000000057ceb3b (/usr/bin/c+++0x57ceb3b) #3 0x000000082b6df64f (/lib/libthr.so.3+0x1a64f) #4 0x000000082b6dec0b (/lib/libthr.so.3+0x19c0b) #5 0x00000008281d5903 ([vdso]+0x2d3) #6 0x000000082f68b76a thr_kill (/lib/libc.so.7+0x13c76a) #7 0x000000082f604c84 raise (/lib/libc.so.7+0xb5c84) #8 0x000000082f6b4e49 abort (/lib/libc.so.7+0x165e49) #9 0x000000082f5e7ee1 (/lib/libc.so.7+0x98ee1) #10 0x0000000003dea161 (/usr/bin/c+++0x3dea161) #11 0x0000000003dea717 (/usr/bin/c+++0x3dea717) #12 0x0000000003ae7045 (/usr/bin/c+++0x3ae7045) #13 0x0000000003ae43a9 (/usr/bin/c+++0x3ae43a9) #14 0x0000000003a7c9d4 (/usr/bin/c+++0x3a7c9d4) #15 0x0000000003a7c2c0 (/usr/bin/c+++0x3a7c2c0) #16 0x0000000003a7b21a (/usr/bin/c+++0x3a7b21a) #17 0x0000000003abffb2 (/usr/bin/c+++0x3abffb2) #18 0x0000000003abf750 (/usr/bin/c+++0x3abf750) #19 0x0000000003ae2f34 (/usr/bin/c+++0x3ae2f34) #20 0x0000000003a7ad79 (/usr/bin/c+++0x3a7ad79) #21 0x0000000003abffb2 (/usr/bin/c+++0x3abffb2) #22 0x0000000003abf750 (/usr/bin/c+++0x3abf750) #23 0x0000000003ae2f34 (/usr/bin/c+++0x3ae2f34) #24 0x0000000003a7ad79 (/usr/bin/c+++0x3a7ad79) #25 0x0000000003a7914f (/usr/bin/c+++0x3a7914f) #26 0x0000000003a7386e (/usr/bin/c+++0x3a7386e) #27 0x000000000342117f (/usr/bin/c+++0x342117f) #28 0x00000000033ab93d (/usr/bin/c+++0x33ab93d) #29 0x00000000034e6abd (/usr/bin/c+++0x34e6abd) #30 0x00000000028af8fd (/usr/bin/c+++0x28af8fd) #31 0x00000000028be100 (/usr/bin/c+++0x28be100) #32 0x000000000324c737 (/usr/bin/c+++0x324c737) #33 0x00000000057ce8d9 (/usr/bin/c+++0x57ce8d9) #34 0x000000000324c084 (/usr/bin/c+++0x324c084) #35 0x00000000032132a4 (/usr/bin/c+++0x32132a4) #36 0x0000000003213578 (/usr/bin/c+++0x3213578) #37 0x000000000322d9c1 (/usr/bin/c+++0x322d9c1) #38 0x00000000028bd6c3 (/usr/bin/c+++0x28bd6c3) #39 0x000000082f5d976a __libc_start1 (/lib/libc.so.7+0x8a76a) c++: error: clang frontend command failed with exit code 134 (use -v to see invocation) FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin c++: note: diagnostic msg:=20 ******************** --=20 You are receiving this mail because: You are the assignee for the bug.=
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