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Date:      Tue, 30 Apr 2013 13:55:13 +0200 (CEST)
From:      Roland Smith <rsmith@xs4all.nl>
To:        FreeBSD-gnats-submit@freebsd.org
Subject:   ports/178256: [PATCH] Unbreak math/py-numpy with python 3.3 and update to 1.7.0.
Message-ID:  <20130430115513.8B2B21280B@slackbox.erewhon.net>
Resent-Message-ID: <201304301200.r3UC00EA026313@freefall.freebsd.org>

---

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---

>Number:         178256
>Category:       ports
>Synopsis:       [PATCH] Unbreak math/py-numpy with python 3.3 and update to 1.7.0.
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          update
>Submitter-Id:   current-users
>Arrival-Date:   Tue Apr 30 12:00:00 UTC 2013
>Closed-Date:
>Last-Modified:
>Originator:     Roland Smith
>Release:        FreeBSD 9.1-RELEASE-p1 amd64
>Organization:
>Environment:
System: FreeBSD slackbox.erewhon.net 9.1-RELEASE-p1 FreeBSD 9.1-RELEASE-p1 #0 r247839: Wed Mar 6 01:08:14 CET 2013 rsmith@slackbox.erewhon.net:/usr/obj/usr/src/sys/GENERIC amd64


	
>Description:
	The current numpy in ports (1.6.2) doesn't build with python3.3.
>How-To-Repeat:
	Try building numpy 1.6.2 with python3.3. It fails;

In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:10:0
:
numpy/core/src/multiarray/scalartypes.c.src: In function 'string_arrtype_new':
numpy/core/src/multiarray/scalartypes.c.src:2326:45: error: 'PyUnicodeObject' h
as no member named 'length'
In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:10:0
:
numpy/core/src/multiarray/scalartypes.c.src: In function 'unicode_arrtype_new':
numpy/core/src/multiarray/scalartypes.c.src:2326:45: error: 'PyUnicodeObject' h
as no member named 'length'
In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:11:0
:
numpy/core/src/multiarray/scalarapi.c: In function 'PyArray_Scalar':
numpy/core/src/multiarray/scalarapi.c:704:16: error: 'PyUnicodeObject' has no m
ember named 'str'
numpy/core/src/multiarray/scalarapi.c:705:16: error: 'PyUnicodeObject' has no m
ember named 'defenc'
numpy/core/src/multiarray/scalarapi.c:706:16: error: 'PyUnicodeObject' has no m
ember named 'hash'
numpy/core/src/multiarray/scalarapi.c:718:16: error: 'PyUnicodeObject' has no m
ember named 'str'
numpy/core/src/multiarray/scalarapi.c:719:16: error: 'PyUnicodeObject' has no m
ember named 'str'
numpy/core/src/multiarray/scalarapi.c:720:16: error: 'PyUnicodeObject' has no m
ember named 'length'
In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:14:0
:
numpy/core/src/multiarray/arraytypes.c.src: In function 'VOID_getitem':
numpy/core/src/multiarray/arraytypes.c.src:591:35: warning: assignment from inc
ompatible pointer type [enabled by default]
In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:25:0
:
numpy/core/src/multiarray/getset.c: In function 'array_data_get':
numpy/core/src/multiarray/getset.c:293:5: warning: passing argument 1 of 'PyMem
oryView_FromObject' from incompatible pointer type [enabled by default]
/usr/local/include/python3.3m/memoryobject.h:23:24: note: expected 'struct PyOb
ject *' but argument is of type 'struct PyArrayObject *'
In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:39:0
:
numpy/core/src/multiarray/nditer_pywrap.c: In function 'npyiter_subscript':
numpy/core/src/multiarray/nditer_pywrap.c:2264:29: warning: passing argument 1 
of 'PySlice_GetIndices' from incompatible pointer type [enabled by default]
/usr/local/include/python3.3m/sliceobject.h:38:17: note: expected 'struct PyObj
ect *' but argument is of type 'struct PySliceObject *'
numpy/core/src/multiarray/nditer_pywrap.c: In function 'npyiter_ass_subscript':
numpy/core/src/multiarray/nditer_pywrap.c:2314:29: warning: passing argument 1 
of 'PySlice_GetIndices' from incompatible pointer type [enabled by default]
/usr/local/include/python3.3m/sliceobject.h:38:17: note: expected 'struct PyObject *' but argument is of type 'struct PySliceObject *'
In file included from numpy/core/src/private/npy_config.h:4:0,
                 from numpy/core/src/multiarray/common.c:8,
                 from numpy/core/src/multiarray/multiarraymodule_onefile.c:8:
build/src.freebsd-9.1-RELEASE-p1-amd64-3.3/numpy/core/include/numpy/config.h:27:0: warning: "HAVE_LOG2" redefined [enabled by default]
/usr/local/include/python3.3m/pyconfig.h:518:0: note: this is the location of the previous definition
In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:10:0:
numpy/core/src/multiarray/scalartypes.c.src: In function 'string_arrtype_new':
numpy/core/src/multiarray/scalartypes.c.src:2326:45: error: 'PyUnicodeObject' has no member named 'length'
In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:10:0:
numpy/core/src/multiarray/scalartypes.c.src: In function 'unicode_arrtype_new':
numpy/core/src/multiarray/scalartypes.c.src:2326:45: error: 'PyUnicodeObject' has no member named 'length'
In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:11:0:
numpy/core/src/multiarray/scalarapi.c: In function 'PyArray_Scalar':
numpy/core/src/multiarray/scalarapi.c:704:16: error: 'PyUnicodeObject' has no member named 'str'
numpy/core/src/multiarray/scalarapi.c:705:16: error: 'PyUnicodeObject' has no member named 'defenc'
numpy/core/src/multiarray/scalarapi.c:706:16: error: 'PyUnicodeObject' has no member named 'hash'
numpy/core/src/multiarray/scalarapi.c:718:16: error: 'PyUnicodeObject' has no member named 'str'
numpy/core/src/multiarray/scalarapi.c:719:16: error: 'PyUnicodeObject' has no member named 'str'
numpy/core/src/multiarray/scalarapi.c:720:16: error: 'PyUnicodeObject' has no member named 'length'
In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:14:0:
numpy/core/src/multiarray/arraytypes.c.src: In function 'VOID_getitem':
numpy/core/src/multiarray/arraytypes.c.src:591:35: warning: assignment from incompatible pointer type [enabled by default]
In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:25:0:
numpy/core/src/multiarray/getset.c: In function 'array_data_get':
numpy/core/src/multiarray/getset.c:293:5: warning: passing argument 1 of 'PyMemoryView_FromObject' from incompatible pointer type [enabled by default]
/usr/local/include/python3.3m/memoryobject.h:23:24: note: expected 'struct PyObject *' but argument is of type 'struct PyArrayObject *'
In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:39:0:
numpy/core/src/multiarray/nditer_pywrap.c: In function 'npyiter_subscript':
numpy/core/src/multiarray/nditer_pywrap.c:2264:29: warning: passing argument 1 of 'PySlice_GetIndices' from incompatible pointer type [enabled by default]
/usr/local/include/python3.3m/sliceobject.h:38:17: note: expected 'struct PyObject *' but argument is of type 'struct PySliceObject *'
numpy/core/src/multiarray/nditer_pywrap.c: In function 'npyiter_ass_subscript':
numpy/core/src/multiarray/nditer_pywrap.c:2314:29: warning: passing argument 1 of 'PySlice_GetIndices' from incompatible pointer type [enabled by default]
/usr/local/include/python3.3m/sliceobject.h:38:17: note: expected 'struct PyObject *' but argument is of type 'struct PySliceObject *'
*** [do-build] Error code 1

Stop in /usr/ports/math/py-numpy.
*** [build] Error code 1

Stop in /usr/ports/math/py-numpy.


>Fix:

Apply the following patch to the port:
---------- patch ----------
diff -ruN py-numpy-orig/Makefile py-numpy/Makefile
--- py-numpy-orig/Makefile	2012-11-17 06:59:29.000000000 +0100
+++ py-numpy/Makefile	2013-04-30 11:08:23.000000000 +0200
@@ -1,22 +1,15 @@
-# New ports collection makefile for:	numpy
-# Date created:				24 July 2006
-# Whom:					Tony Maher
-#
 # $FreeBSD: ports/math/py-numpy/Makefile,v 1.41 2012/11/17 05:59:29 svnexp Exp $
-#
 
 PORTNAME=	numpy
-PORTVERSION=	1.6.2
-PORTREVISION=	1
-PORTEPOCH=	1
+PORTVERSION=	1.7.0
 CATEGORIES=	math python
 MASTER_SITES=	http://docs.scipy.org/doc/${DISTNAME:C/\..$/.0/}/:doc \
 		SF/${PORTNAME}/NumPy/${PORTVERSION}:source
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
-DISTFILES=	numpy-${PORTVERSION:S/r/rc/}${EXTRACT_SUFX}:source \
-		numpy-ref.pdf:doc \
-		numpy-user.pdf:doc
-EXTRACT_ONLY=	numpy-${PORTVERSION:S/r/rc/}${EXTRACT_SUFX}
+DISTFILES=	numpy-${PORTVERSION}${EXTRACT_SUFX}:source \
+		numpy-user-${PORTVERSION}.pdf:doc \
+		numpy-ref-${PORTVERSION}.pdf:doc
+EXTRACT_ONLY=	numpy-${PORTVERSION}${EXTRACT_SUFX}
 
 MAINTAINER=	llwang@infor.org
 COMMENT=	The New Numeric Extension to Python
@@ -75,8 +68,8 @@
 PYDISTUTILS_BUILDARGS+=	--fcompiler=gnu95
 
 post-extract:
-	@${CP} ${DISTDIR}/numpy-ref.pdf ${WRKDIR}
-	@${CP} ${DISTDIR}/numpy-user.pdf ${WRKDIR}
+	@${CP} ${DISTDIR}/numpy-ref-${PORTVERSION}.pdf ${WRKDIR}
+	@${CP} ${DISTDIR}/numpy-user-${PORTVERSION}.pdf ${WRKDIR}
 
 post-patch:
 	@${REINPLACE_CMD} -e "s+%%FC%%+${FC}+" ${WRKSRC}/numpy/distutils/fcompiler/gnu.py
@@ -92,7 +85,7 @@
 		${CP} ${DISTDIR}/${FP_ARCH}/fenv.h?p=203441 ${WRKSRC}/numpy/core/include/numpy/fenv/fenv.h; \
 		${REINPLACE_CMD} -e 's|<fenv.h>|"fenv.h"|' ${WRKSRC}/numpy/core/include/numpy/fenv/fenv.c; \
 		${PATCH} ${PATCH_DIST_ARGS} < ${FILESDIR}/fenv.patch; \
- 	fi
+	fi
 .endif
 .if ${PORT_OPTIONS:MATLAS}
 	@${REINPLACE_CMD} -e "s+%%ATLASLIBS%%+alapack, f77blas, cblas, atlas+" ${WRKSRC}/site.cfg
@@ -118,8 +111,8 @@
 	${INSTALL_MAN} ${WRKSRC}/numpy/f2py/f2py.1 ${MAN1PREFIX}/man/man1
 .if !defined(NOPORTDOCS)
 	@${MKDIR} ${DOCSDIR}
-	${INSTALL_DATA} ${WRKDIR}/numpy-ref.pdf ${DOCSDIR}
-	${INSTALL_DATA} ${WRKDIR}/numpy-user.pdf ${DOCSDIR}
+	${INSTALL_DATA} ${WRKDIR}/numpy-ref-${PORTVERSION}.pdf ${DOCSDIR}
+	${INSTALL_DATA} ${WRKDIR}/numpy-user-${PORTVERSION}.pdf ${DOCSDIR}
 .endif
 .if defined(WITH_FIXED_FENV)
 	@if [ "`${PKG_VERSION} -t \"\`\\\`${CC} -print-prog-name=as\\\` --version | ${AWK} 'NR==1 {sub(/\(GNU Binutils\)/,""); print $$3}'\`\" 2.18.49`" = ">" ] ; then \
diff -ruN py-numpy-orig/distinfo py-numpy/distinfo
--- py-numpy-orig/distinfo	2012-07-28 08:00:02.000000000 +0200
+++ py-numpy/distinfo	2013-04-30 11:06:36.000000000 +0200
@@ -1,10 +1,10 @@
-SHA256 (numpy-1.6.2.tar.gz) = 0b83d96ab79711b548470b7aeee1272c4ba8fcbba6586a67116b566a21ed16c6
-SIZE (numpy-1.6.2.tar.gz) = 2585329
-SHA256 (numpy-ref.pdf) = cbeea9b1395e0576bbd256c5de11886c63321d434785c6777df7bdd50109ba9f
-SIZE (numpy-ref.pdf) = 6106335
-SHA256 (numpy-user.pdf) = d8d51913cb494228f69c5f16d659b8539cbd04c6e584fde72c00c382e86eea8f
-SIZE (numpy-user.pdf) = 474664
-SHA256 (i387/fenv.c?p=203441) = c7c558ddb6ab6604c83062fe0655d3ce8cf4d60edb4c9c82777962c49d23ca54
+SHA256 (numpy-1.7.0.tar.gz) = f4fa70b7edbab65ee6432eb63743f5489f1919c614632b20b2fb45aa7e682ac6
+SIZE (numpy-1.7.0.tar.gz) = 2832457
+SHA256 (reference.pdf) = e38a374922e81b6581114756d1f816a3d2eb5424df0e925f44c39de7301acf5a
+SIZE (numpy-ref-1.7.0.pdf) = 5161456
+SHA256 (numpy-ref-1.7.0.pdf) = 0581709ef96441953404bc1369d70117b83359aff94f44779b960bed30a156d7
+SIZE (numpy-user-1.7.0.pdf) = 404104
+SHA256 (numpy-user-1.7.0.pdf) = 0c8dc1d53cc057a66139039dbaaf65499687cf64e72af5852eb96d9c3cd3ab18
 SIZE (i387/fenv.c?p=203441) = 4791
 SHA256 (i387/fenv.h?p=203441) = 40c72f3cdd6990076394056e06461e1daeb6087b6a32f1962d3c33b0a00c0e0d
 SIZE (i387/fenv.h?p=203441) = 6774
diff -ruN py-numpy-orig/files/patch-numpy-distutils-system_info.py py-numpy/files/patch-numpy-distutils-system_info.py
--- py-numpy-orig/files/patch-numpy-distutils-system_info.py	2011-12-09 09:01:13.000000000 +0100
+++ py-numpy/files/patch-numpy-distutils-system_info.py	2013-03-22 21:04:18.000000000 +0100
@@ -1,9 +1,9 @@
---- numpy/distutils/system_info.py.orig	2011-07-01 22:31:13.000000000 +0100
-+++ numpy/distutils/system_info.py	2011-11-26 09:54:54.000000000 +0000
-@@ -910,8 +910,8 @@
+--- numpy/distutils/system_info.py.orig	2013-02-09 22:04:56.000000000 +0100
++++ numpy/distutils/system_info.py	2013-03-22 21:01:34.000000000 +0100
+@@ -983,8 +983,8 @@
      dir_env_var = 'ATLAS'
-     _lib_names = ['f77blas','cblas']
-     if sys.platform[:7]=='freebsd':
+     _lib_names = ['f77blas', 'cblas']
+     if sys.platform[:7] == 'freebsd':
 -        _lib_atlas = ['atlas_r']
 -        _lib_lapack = ['alapack_r']
 +        _lib_atlas = ['atlas']
@@ -11,11 +11,3 @@
      else:
          _lib_atlas = ['atlas']
          _lib_lapack = ['lapack']
-@@ -939,6 +939,7 @@
-             atlas = self.check_libs2(d,atlas_libs,[])
-             lapack_atlas = self.check_libs2(d,['lapack_atlas'],[])
-             if atlas is not None:
-+                atlas['libraries'].extend(['gfortran', 'm', 'pthread'])
-                 lib_dirs2 = [d] + self.combine_paths(d,['atlas*','ATLAS*'])
-                 for d2 in lib_dirs2:
-                     lapack = self.check_libs2(d2,lapack_libs,[])
diff -ruN py-numpy-orig/pkg-descr py-numpy/pkg-descr
--- py-numpy-orig/pkg-descr	2006-09-01 20:14:16.000000000 +0200
+++ py-numpy/pkg-descr	2013-03-22 20:56:50.000000000 +0100
@@ -15,4 +15,4 @@
 Note:	Development for Numeric has ceased, and users should transisition to
 	NumPy as quickly as possible.
 
-WWW: http://numpy.scipy.org/
+WWW: http://www.numpy.org/
diff -ruN py-numpy-orig/pkg-plist py-numpy/pkg-plist
--- py-numpy-orig/pkg-plist	2012-06-22 10:23:29.000000000 +0200
+++ py-numpy/pkg-plist	2013-04-30 11:51:02.000000000 +0200
@@ -1,68 +1,100 @@
 bin/f2py
 %%PYTHON_SITELIBDIR%%/numpy/__config__.py
-%%PYTHON_SITELIBDIR%%/numpy/__config__.pyc
-%%PYTHON_SITELIBDIR%%/numpy/__config__.pyo
 %%PYTHON_SITELIBDIR%%/numpy/__init__.py
-%%PYTHON_SITELIBDIR%%/numpy/__init__.pyc
-%%PYTHON_SITELIBDIR%%/numpy/__init__.pyo
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__config__.cpython-33.pyc
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__config__.cpython-33.pyo
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__init__.cpython-33.pyc
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__init__.cpython-33.pyo
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/_import_tools.cpython-33.pyc
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/_import_tools.cpython-33.pyo
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/add_newdocs.cpython-33.pyc
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/add_newdocs.cpython-33.pyo
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/ctypeslib.cpython-33.pyc
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/ctypeslib.cpython-33.pyo
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/dual.cpython-33.pyc
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/dual.cpython-33.pyo
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/matlib.cpython-33.pyc
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/matlib.cpython-33.pyo
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/setup.cpython-33.pyc
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/setup.cpython-33.pyo
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/setupscons.cpython-33.pyc
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/setupscons.cpython-33.pyo
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/version.cpython-33.pyc
+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/version.cpython-33.pyo
 %%PYTHON_SITELIBDIR%%/numpy/_import_tools.py
-%%PYTHON_SITELIBDIR%%/numpy/_import_tools.pyc
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 %%PYTHON_SITELIBDIR%%/numpy/add_newdocs.py
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---------- patch ----------



>Release-Note:
>Audit-Trail:
>Unformatted:

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