Date: Mon, 10 Jun 2019 20:50:55 +0000 From: bugzilla-noreply@freebsd.org To: ports-bugs@FreeBSD.org Subject: [Bug 238471] biology/ncbi-blast+ fails to build with current GCC: seqdb_reader/test/seqdb_perf.cpp:152:34: error: 'kScanUncompressed' not specified in enclosing 'parallel' Message-ID: <bug-238471-7788@https.bugs.freebsd.org/bugzilla/>
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D238471 Bug ID: 238471 Summary: biology/ncbi-blast+ fails to build with current GCC: seqdb_reader/test/seqdb_perf.cpp:152:34: error: 'kScanUncompressed' not specified in enclosing 'parallel' Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Some People Priority: --- Component: Individual Port(s) Assignee: ports-bugs@FreeBSD.org Reporter: gerald@FreeBSD.org Blocks: 238330 See PR 238330 for details, which is about updating the default version of GCC from 8 to 9.=20 Detailed logs at: http://pb2.nyi.freebsd.org/data/120i386-default-PR238330/2019-06-09_20h27m2= 2s/logs/errors/ncbi-blast+-2.8.1_2.log http://package22.nyi.freebsd.org/data/112amd64-default-PR238330/2019-06-09_= 20h29m30s/logs/errors/ncbi-blast+-2.8.1_2.log http://package18.nyi.freebsd.org/data/120amd64-default-PR238330/2019-06-09_= 20h26m27s/logs/errors/ncbi-blast+-2.8.1_2.log The update to a newer version of GCC is blocked by this issue which=20 appears to be about improper use of GOMP: ~~^~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/o= bjtools/blast/seqdb_reader/test/seqdb_perf.cpp:152:34: error: 'kScanUncompressed' not specified in enclosing 'parallel' 152 | if (m_DbIsProtein || kScanUncompressed) { | ^~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/o= bjtools/blast/seqdb_reader/test/seqdb_perf.cpp:140:13: error: enclosing 'parallel' 140 | #pragma omp parallel default(none) num_threads(m_DbHandles.size= ()) \ | ^~~ gmake[7]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/Rele= aseMT/build/Makefile.rules:88: seqdb_perf.o] Error 1 Referenced Bugs: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D238330 [Bug 238330] [exp-run] Update GCC_DEFAULT from 8 to 9 --=20 You are receiving this mail because: You are the assignee for the bug.=
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