From owner-freebsd-ports-bugs@freebsd.org Tue Feb 21 11:35:46 2017 Return-Path: Delivered-To: freebsd-ports-bugs@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 4B078CE76BC for ; Tue, 21 Feb 2017 11:35:46 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2001:1900:2254:206a::16:76]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 2247417CC for ; Tue, 21 Feb 2017 11:35:46 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from bugs.freebsd.org ([127.0.1.118]) by kenobi.freebsd.org (8.15.2/8.15.2) with ESMTP id v1LBZj6X001672 for ; Tue, 21 Feb 2017 11:35:46 GMT (envelope-from bugzilla-noreply@freebsd.org) From: bugzilla-noreply@freebsd.org To: freebsd-ports-bugs@FreeBSD.org Subject: [Bug 217269] /science/py-pyteomics: Update to 3.4.1 Date: Tue, 21 Feb 2017 11:35:46 +0000 X-Bugzilla-Reason: AssignedTo X-Bugzilla-Type: new X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports & Packages X-Bugzilla-Component: Individual Port(s) X-Bugzilla-Version: Latest X-Bugzilla-Keywords: X-Bugzilla-Severity: Affects Some People X-Bugzilla-Who: joneum@bsdproject.de X-Bugzilla-Status: New X-Bugzilla-Resolution: X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: freebsd-ports-bugs@FreeBSD.org X-Bugzilla-Flags: X-Bugzilla-Changed-Fields: bug_id short_desc product version rep_platform op_sys bug_status bug_severity priority component assigned_to reporter attachments.created Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated MIME-Version: 1.0 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 21 Feb 2017 11:35:46 -0000 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D217269 Bug ID: 217269 Summary: /science/py-pyteomics: Update to 3.4.1 Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Some People Priority: --- Component: Individual Port(s) Assignee: freebsd-ports-bugs@FreeBSD.org Reporter: joneum@bsdproject.de Created attachment 180183 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D180183&action= =3Dedit Patch http://pythonhosted.org/pyteomics/changelog.html#id1 Add selenocysteine (=E2=80=9CU=E2=80=9D) and pyrrolysine (=E2=80=9C= O=E2=80=9D) to pyteomics.mass.std_aa_mass and pyteomics.mass.std_aa_comp. An optional parameter encoding is now accepted by text file readers (pyteomics.mgf.read() and pyteomics.fasta.read()). This can be useful for M= GF files with non-ASCII spectrum titles or comments. New function pyteomics.mass.mass.isotopologues(). Performance improvements in pyteomics.electrochem.pI(). Fix the issue in pyteomics.xml which resulted in very long processi= ng times for indexed XML files with a byte ordering mark (BOM). Support all standard and non-standard data array names in pyteomics.mzml. Change default value of retrieve_refs in pyteomics.mzid.read() to T= rue. Preserve unit information extracted from cvParam tags in PSI XML fi= les. Fix in pyteomics.mzxml, other minor fixes. poudriere build fine for: 10.3 amd + i386 11.0 amd + i386 12-current amd + i386 (r313761) portlint is also fine. Cheers jochen --=20 You are receiving this mail because: You are the assignee for the bug.=