From owner-freebsd-ports@freebsd.org Sat Apr 16 20:44:34 2016 Return-Path: Delivered-To: freebsd-ports@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 89E5BB114FF for ; Sat, 16 Apr 2016 20:44:34 +0000 (UTC) (envelope-from jdm7dv@gmail.com) Received: from mail-ig0-x230.google.com (mail-ig0-x230.google.com [IPv6:2607:f8b0:4001:c05::230]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (Client CN "smtp.gmail.com", Issuer "Google Internet Authority G2" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 5588F1200 for ; Sat, 16 Apr 2016 20:44:34 +0000 (UTC) (envelope-from jdm7dv@gmail.com) Received: by mail-ig0-x230.google.com with SMTP id g8so51788574igr.0 for ; Sat, 16 Apr 2016 13:44:34 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=mime-version:in-reply-to:references:date:message-id:subject:from:to :cc; bh=Z93Ge/pZY1cZnBWYA/XTPMGUanuICr3wKXFEnUIOYAc=; b=kM+aTbd92NAsEwoCD9lcAHoA0LspSBX5MTQO0rCkPyt5BEbrnbRCCtQ2VvITX5gSeN k3lQKn6gZc8g/eeVb7juWw4JzxYIMmovDvtclZIhpeEdVy2BNT9nR7cGWmGSoG/fBcUS T7QiA5tGIsf5VWwys/5MW5d7WfG0/gHXkC+eZXL+O115UQuI99Tqvkq2nj5x2h50lAln iPbqNZPyUA4ErOw4MTmPIQh+aTtlVFS4A1b5Dt09AhwuelLb7iBZY43YBqoAReQaBvon TA51CaKeXj0ofwMFiEE6FTxyJW3kIZS0kvw8YSdNiadetiGTBhxuyHqcrotJuE+qpmpB 5C+w== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20130820; h=x-gm-message-state:mime-version:in-reply-to:references:date :message-id:subject:from:to:cc; bh=Z93Ge/pZY1cZnBWYA/XTPMGUanuICr3wKXFEnUIOYAc=; b=EGJoiqKt0V7eSQKr09SsXhnIPTcj5pskUejpnpkn5at3Fs73V8xTTggWMUpYgAZFJJ +IFNLhyuXN4VlxaIBSnu3azA+P6paVNfIABRl4vkHHx2snH/L7wWGf2ZMxBkhnuQkRmK cvG4oELD5W9xvon7COctaaiHoBlDOhRNMtNNtQY5ATaNyD7hvx/Ms0d3MpGMvfUS1PHW j2l8bF7VlDFQrnAmouE4f+Y+M0OWBDjrgz+vrLgU/X9BNFq8xo6CsUgVdxVrYAuK6ktb WbDhpf8O04nir1aRGkTuTyHmA1lmUZjKhusZIZiuHeZB0LA+Pl9+gwpLhhffcLNwyjL1 +RPg== X-Gm-Message-State: AOPr4FWerOvkDt6wxxpHxYp2RHHnAzHPFdc2E/fkOlqDGX2lkv6vMS6LOnePlk7Z8mMwNV5TcR0wqQnDQpJjdA== MIME-Version: 1.0 X-Received: by 10.50.67.36 with SMTP id k4mr12044499igt.89.1460839473623; Sat, 16 Apr 2016 13:44:33 -0700 (PDT) Received: by 10.107.22.66 with HTTP; Sat, 16 Apr 2016 13:44:33 -0700 (PDT) In-Reply-To: <20160416135134.GI2282@home.opsec.eu> References: <20160416135134.GI2282@home.opsec.eu> Date: Sat, 16 Apr 2016 16:44:33 -0400 Message-ID: Subject: Re: Starting a new team From: Jonathan Moore To: Kurt Jaeger Cc: freebsd-ports@freebsd.org Content-Type: text/plain; charset=UTF-8 X-Content-Filtered-By: Mailman/MimeDel 2.1.21 X-BeenThere: freebsd-ports@freebsd.org X-Mailman-Version: 2.1.21 Precedence: list List-Id: Porting software to FreeBSD List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 16 Apr 2016 20:44:34 -0000 It work be a lot of work. After looking at the ports I've discovered UGENE. And I like on premise software anyway. Would you or anyone know how to get on the UGENE FreeBSD port team? Thanks, Jonathan On Sat, Apr 16, 2016 at 9:51 AM, Kurt Jaeger wrote: > Hi! > > > I was wondering if there would be any interest in starting a new team > for a > > Gene Pattern port. Here is there github -> > > https://github.com/genepattern/genepattern-server > > > > And website - > > http://www.broadinstitute.org/cancer/software/genepattern/ > > I had a quick look at it. Is there any documentation on how it would > be built ? I've also asked their team via their contact form at > > http://www.broadinstitute.org/cancer/software/genepattern/contact > > So, I have a certain curiosity in the bio/gene software toolchains, > but they have their quirks for some non-bio-science person > to understand, let alone build from source etc. > > From what I understand, they have a public webserver where you can > get access and use their software. What is the added value > to replicate that type of server, or trying to understand > their build process, given that it probably takes serious amounts of > work to pull off ? > > -- > pi@opsec.eu +49 171 3101372 4 years to > go ! >