Date: Sun, 27 Jul 2014 04:42:25 GMT From: pkg-fallout@FreeBSD.org To: sangwoos@gmail.com Cc: pkg-fallout@FreeBSD.org Subject: [package - 10amd64-default][biology/protomol] Failed for protomol-2.0.3_9 in build Message-ID: <201407270442.s6R4gPO8056593@beefy2.isc.freebsd.org>
next in thread | raw e-mail | index | archive | help
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: sangwoos@gmail.com Last committer: zeising@FreeBSD.org Ident: $FreeBSD: head/biology/protomol/Makefile 351411 2014-04-16 18:28:47Z zeising $ Log URL: http://beefy2.isc.freebsd.org/data/10amd64-default/2014-07-26_20h05m14s/logs/protomol-2.0.3_9.log Build URL: http://beefy2.isc.freebsd.org/build.html?mastername=10amd64-default&build=2014-07-26_20h05m14s Log: ====>> Building biology/protomol build started at Sun Jul 27 04:38:39 UTC 2014 port directory: /usr/ports/biology/protomol building for: FreeBSD 10amd64-default-job-17 10.0-RELEASE-p7 FreeBSD 10.0-RELEASE-p7 amd64 maintained by: sangwoos@gmail.com Makefile ident: $FreeBSD: head/biology/protomol/Makefile 351411 2014-04-16 18:28:47Z zeising $ Poudriere version: 3.1-pre Host OSVERSION: 1100027 Jail OSVERSION: 1000510 ---Begin Environment--- OSVERSION=1000510 UNAME_v=FreeBSD 10.0-RELEASE-p7 UNAME_r=10.0-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM=screen MASTERMNT=/usr/local/poudriere/data/.m/10amd64-default/ref PKG_EXT=txz PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=protomol-2.0.3_9 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add OLDPWD=/root PWD=/usr/local/poudriere/data/.m/10amd64-default/ref/.p/pool MASTERNAME=10amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/.p/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for protomol-2.0.3_9: GLUT=on: OpenGL Utility Toolkit support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --without-irix_mipspro_mpi --with-glut=yes --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/protomol/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/protomol/work HOME=/wrkdirs/usr/ports/biology/protomol/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/protomol/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/protomol/work HOME=/wrkdirs/usr/ports/biology/protomol/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/protomol/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/protomol/work HOME=/wrkdirs/usr/ports/biology/protomol/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/protomol/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/protomol/work HOME=/wrkdirs/usr/ports/biology/protomol/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing -L/usr/local/lib" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=10.0 PREFIX=%D LOCALBASE=/usr/local PORTDOCS="" PORTEXAMPLES="" PORTDATA="" LIB32DIR=lib DOCSDIR="share/doc/protomol" EXAMPLESDIR="share/examples/protomol" DATADIR="share/protomol" WWWDIR="www/protomol" ETCDIR="etc/protomol" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/protomol DOCSDIR=/usr/local/share/doc/protomol EXAMPLESDIR=/usr/local/share/examples/protomol WWWDIR=/usr/local/www/protomol ETCDIR=/usr/local/etc/protomol --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes # clean-restricted ran via poudriere.conf NO_RESTRICTED #NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Not staged. See http://lists.freebsd.org/pipermail/freebsd-ports-announce/2014-May/000080.html. It is scheduled to be removed on or after 2014-08-31. =========================================================================== =======================<phase: pkg-depends >============================ ===> protomol-2.0.3_9 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.7_4.txz Installing pkg-1.2.7_4... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of protomol-2.0.3_9 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Not staged. See http://lists.freebsd.org/pipermail/freebsd-ports-announce/2014-May/000080.html. It is scheduled to be removed on or after 2014-08-31. ===> Fetching all distfiles required by protomol-2.0.3_9 for building =========================================================================== =======================<phase: checksum >============================ ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Not staged. See http://lists.freebsd.org/pipermail/freebsd-ports-announce/2014-May/000080.html. It is scheduled to be removed on or after 2014-08-31. ===> Fetching all distfiles required by protomol-2.0.3_9 for building => SHA256 Checksum OK for protomol-2.0.3-tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Not staged. See http://lists.freebsd.org/pipermail/freebsd-ports-announce/2014-May/000080.html. It is scheduled to be removed on or after 2014-08-31. ===> Fetching all distfiles required by protomol-2.0.3_9 for building ===> Extracting for protomol-2.0.3_9 => SHA256 Checksum OK for protomol-2.0.3-tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for protomol-2.0.3_9 ===> Applying FreeBSD patches for protomol-2.0.3_9 =========================================================================== =======================<phase: build-depends >============================ ===> protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/xmu.pc in /usr/ports/x11-toolkits/libXmu ===> Installing existing package /packages/All/libXmu-1.1.2_2,1.txz Installing libXmu-1.1.2_2,1...Installing libX11-1.6.2_2,1...Installing kbproto-1.0.6... done Installing libXau-1.0.8_2...Installing xproto-7.0.26... done done Installing libXdmcp-1.1.1_2... done Installing libxcb-1.10_2...Installing libpthread-stubs-0.3_5... done Installing libxml2-2.9.1_1... done done done Installing libXext-1.3.2_2,1...Installing xextproto-7.3.0... done done Installing libXt-1.1.4_2,1...Installing libSM-1.2.2_2,1...Installing libICE-1.0.9,1... done done done done ===> Returning to build of protomol-2.0.3_9 ===> protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found ===> protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/sm.pc - found ===> protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/ice.pc - found ===> protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> protomol-2.0.3_9 depends on file: /usr/local/libdata/pkgconfig/xi.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/xi.pc in /usr/ports/x11/libXi ===> Installing existing package /packages/All/libXi-1.7.4,1.txz Installing libXi-1.7.4,1...Installing inputproto-2.3.1... done Installing libXfixes-5.0.1_2...Installing fixesproto-5.0... done done done ===> Returning to build of protomol-2.0.3_9 =========================================================================== =======================<phase: lib-depends >============================ ===> protomol-2.0.3_9 depends on shared library: libpng15.so - not found ===> Verifying for libpng15.so in /usr/ports/graphics/png <snip> c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierShake.o `test -f 'ModifierShake.cpp' || echo './'`ModifierShake.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierRattle.o `test -f 'ModifierRattle.cpp' || echo './'`ModifierRattle.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNPTShake.o `test -f 'ModifierNPTShake.cpp' || echo './'`ModifierNPTShake.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNPTRattle.o `test -f 'ModifierNPTRattle.cpp' || echo './'`ModifierNPTRattle.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNVTShake.o `test -f 'ModifierNVTShake.cpp' || echo './'`ModifierNVTShake.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNVTRattle.o `test -f 'ModifierNVTRattle.cpp' || echo './'`ModifierNVTRattle.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o PLeapfrogIntegrator.o `test -f 'PLeapfrogIntegrator.cpp' || echo './'`PLeapfrogIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o MOLLYIntegrator.o `test -f 'MOLLYIntegrator.cpp' || echo './'`MOLLYIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o UmbrellaIntegrator.o `test -f 'UmbrellaIntegrator.cpp' || echo './'`UmbrellaIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o MTSIntegrator.o `test -f 'MTSIntegrator.cpp' || echo './'`MTSIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o NoseNVTLeapfrogIntegrator.o `test -f 'NoseNVTLeapfrogIntegrator.cpp' || echo './'`NoseNVTLeapfrogIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o PaulTrapIntegrator.o `test -f 'PaulTrapIntegrator.cpp' || echo './'`PaulTrapIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o LangevinImpulseIntegrator.o `test -f 'LangevinImpulseIntegrator.cpp' || echo './'`LangevinImpulseIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o StandardIntegrator.o `test -f 'StandardIntegrator.cpp' || echo './'`StandardIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o STSIntegrator.o `test -f 'STSIntegrator.cpp' || echo './'`STSIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' rm -f libintegrators.a ar cru libintegrators.a ModifierMetaShake.o ModifierMetaRattle.o ModifierMetaRattleShake.o NPTVerletIntegrator.o NVTVerletIntegrator.o BSplineMOLLYIntegrator.o EquilibriumMOLLYIntegrator.o DihedralHMCIntegrator.o DLMCIntegrator.o ShadowHMCIntegrator.o HMCIntegrator.o MCIntegrator.o ImpulseIntegrator.o Integrator.o IntegratorDefinition.o LeapfrogIntegrator.o DMDLeapfrogIntegrator.o BBKIntegrator.o ModifierShake.o ModifierRattle.o ModifierNPTShake.o ModifierNPTRattle.o ModifierNVTShake.o ModifierNVTRattle.o PLeapfrogIntegrator.o MOLLYIntegrator.o UmbrellaIntegrator.o MTSIntegrator.o NoseNVTLeapfrogIntegrator.o PaulTrapIntegrator.o LangevinImpulseIntegrator.o StandardIntegrator.o STSIntegrator.o NPTVerletIntegrator.o NVTVerletIntegrator.o ranlib libintegrators.a Making all in frontend c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o HelpTextFactory.o `test -f 'HelpTextFactory.cpp' || echo './'`HelpTextFactory.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ForceFactoryDetails.o `test -f 'ForceFactoryDetails.cpp' || echo './'`ForceFactoryDetails.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o InputPosVel.o `test -f 'InputPosVel.cpp' || echo './'`InputPosVel.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o InputPosVelType.o `test -f 'InputPosVelType.cpp' || echo './'`InputPosVelType.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o IntegratorFactoryDetails.o `test -f 'IntegratorFactoryDetails.cpp' || echo './'`IntegratorFactoryDetails.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' IntegratorFactoryDetails.cpp:178:13: warning: '&&' within '||' [-Wlogical-op-parentheses] i > 0 && dynamic_cast<const MTSIntegrator*>(prototype))){ ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ IntegratorFactoryDetails.cpp:178:13: note: place parentheses around the '&&' expression to silence this warning i > 0 && dynamic_cast<const MTSIntegrator*>(prototype))){ ^ ( ) 1 warning generated. c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o Output.o `test -f 'Output.cpp' || echo './'`Output.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputCache.o `test -f 'OutputCache.cpp' || echo './'`OutputCache.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputCollection.o `test -f 'OutputCollection.cpp' || echo './'`OutputCollection.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputDCDTrajectory.o `test -f 'OutputDCDTrajectory.cpp' || echo './'`OutputDCDTrajectory.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputDiffusion.o `test -f 'OutputDiffusion.cpp' || echo './'`OutputDiffusion.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputDihedrals.o `test -f 'OutputDihedrals.cpp' || echo './'`OutputDihedrals.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputEnergies.o `test -f 'OutputEnergies.cpp' || echo './'`OutputEnergies.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFactoryDetails.o `test -f 'OutputFactoryDetails.cpp' || echo './'`OutputFactoryDetails.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFile.o `test -f 'OutputFile.cpp' || echo './'`OutputFile.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalXYZBinPos.o `test -f 'OutputFinalXYZBinPos.cpp' || echo './'`OutputFinalXYZBinPos.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalXYZBinVel.o `test -f 'OutputFinalXYZBinVel.cpp' || echo './'`OutputFinalXYZBinVel.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalXYZPos.o `test -f 'OutputFinalXYZPos.cpp' || echo './'`OutputFinalXYZPos.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalPDBPos.o `test -f 'OutputFinalPDBPos.cpp' || echo './'`OutputFinalPDBPos.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalXYZVel.o `test -f 'OutputFinalXYZVel.cpp' || echo './'`OutputFinalXYZVel.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputMomentum.o `test -f 'OutputMomentum.cpp' || echo './'`OutputMomentum.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputPaulTrap.o `test -f 'OutputPaulTrap.cpp' || echo './'`OutputPaulTrap.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputPDBFramePos.o `test -f 'OutputPDBFramePos.cpp' || echo './'`OutputPDBFramePos.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputScreen.o `test -f 'OutputScreen.cpp' || echo './'`OutputScreen.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputTemperatures.o `test -f 'OutputTemperatures.cpp' || echo './'`OutputTemperatures.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputXYZTrajectoryForce.o `test -f 'OutputXYZTrajectoryForce.cpp' || echo './'`OutputXYZTrajectoryForce.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputXYZTrajectoryPos.o `test -f 'OutputXYZTrajectoryPos.cpp' || echo './'`OutputXYZTrajectoryPos.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputXYZTrajectoryVel.o `test -f 'OutputXYZTrajectoryVel.cpp' || echo './'`OutputXYZTrajectoryVel.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o TopologyFactoryDetails.o `test -f 'TopologyFactoryDetails.cpp' || echo './'`TopologyFactoryDetails.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o buildTopology.o `test -f 'buildTopology.cpp' || echo './'`buildTopology.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o inputValueDefinitions.o `test -f 'inputValueDefinitions.cpp' || echo './'`inputValueDefinitions.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o parseCommandLine.o `test -f 'parseCommandLine.cpp' || echo './'`parseCommandLine.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' rm -f libfrontend.a ar cru libfrontend.a HelpTextFactory.o ForceFactoryDetails.o InputPosVel.o InputPosVelType.o IntegratorFactoryDetails.o Output.o OutputCache.o OutputCollection.o OutputDCDTrajectory.o OutputDiffusion.o OutputDihedrals.o OutputEnergies.o OutputFactoryDetails.o OutputFile.o OutputFinalXYZBinPos.o OutputFinalXYZBinVel.o OutputFinalXYZPos.o OutputFinalPDBPos.o OutputFinalXYZVel.o OutputMomentum.o OutputPaulTrap.o OutputPDBFramePos.o OutputScreen.o OutputTemperatures.o OutputXYZTrajectoryForce.o OutputXYZTrajectoryPos.o OutputXYZTrajectoryVel.o TopologyFactoryDetails.o buildTopology.o inputValueDefinitions.o parseCommandLine.o ranlib libfrontend.a Making all in factories c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I../../framework/factories -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o registerForceExemplars.o `test -f 'registerForceExemplars.cpp' || echo './'`registerForceExemplars.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I../../framework/factories -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o registerForceExemplarsBonded.o `test -f 'registerForceExemplarsBonded.cpp' || echo './'`registerForceExemplarsBonded.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' In file included from registerForceExemplarsBonded.cpp:8: ./../framework/forces/ImproperSystemForce.h:72:7: error: use of undeclared identifier 'calcTorsion' calcTorsion(boundary,topo->impropers[i], positions, forces, (*energies)[ScalarStructure::IMPROPER],energies); ^ this-> registerForceExemplarsBonded.cpp:16:40: note: in instantiation of member function 'ProtoMol::ImproperSystemForce<ProtoMol::PeriodicBoundaryConditions>::evaluate' requested here ForceFactory::registerExemplar(new ImproperSystemForce<PeriodicBoundaryConditions>()); ^ ./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify identifier to find this declaration in dependent base class void calcTorsion(const TBoundaryConditions &boundary, ^ In file included from registerForceExemplarsBonded.cpp:8: ./../framework/forces/ImproperSystemForce.h:93:4: error: use of undeclared identifier 'calcTorsion' calcTorsion(boundary, topo->impropers[j], positions, forces, (*energies)[ScalarStructure::IMPROPER],energies); ^ this-> registerForceExemplarsBonded.cpp:16:40: note: in instantiation of member function 'ProtoMol::ImproperSystemForce<ProtoMol::PeriodicBoundaryConditions>::parallelEvaluate' requested here ForceFactory::registerExemplar(new ImproperSystemForce<PeriodicBoundaryConditions>()); ^ ./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify identifier to find this declaration in dependent base class void calcTorsion(const TBoundaryConditions &boundary, ^ In file included from registerForceExemplarsBonded.cpp:9: ./../framework/forces/DihedralSystemForce.h:75:7: error: use of undeclared identifier 'calcTorsion' calcTorsion(boundary,topo->dihedrals[i], positions, forces,(*energies)[ScalarStructure::DIHEDRAL],energies); ^ this-> registerForceExemplarsBonded.cpp:17:40: note: in instantiation of member function 'ProtoMol::DihedralSystemForce<ProtoMol::PeriodicBoundaryConditions>::evaluate' requested here ForceFactory::registerExemplar(new DihedralSystemForce<PeriodicBoundaryConditions>()); ^ ./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify identifier to find this declaration in dependent base class void calcTorsion(const TBoundaryConditions &boundary, ^ In file included from registerForceExemplarsBonded.cpp:9: ./../framework/forces/DihedralSystemForce.h:96:4: error: use of undeclared identifier 'calcTorsion' calcTorsion(boundary, topo->dihedrals[j], positions, forces, (*energies)[ScalarStructure::DIHEDRAL],energies); ^ this-> registerForceExemplarsBonded.cpp:17:40: note: in instantiation of member function 'ProtoMol::DihedralSystemForce<ProtoMol::PeriodicBoundaryConditions>::parallelEvaluate' requested here ForceFactory::registerExemplar(new DihedralSystemForce<PeriodicBoundaryConditions>()); ^ ./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify identifier to find this declaration in dependent base class void calcTorsion(const TBoundaryConditions &boundary, ^ In file included from registerForceExemplarsBonded.cpp:10: ./../framework/forces/HarmDihedralSystemForce.h:122:6: error: use of undeclared identifier 'calcTorsion' calcTorsion(boundary,topo->dihedrals[i], positions, forces,(*energies)[ScalarStructure::DIHEDRAL],energies); ^ this-> registerForceExemplarsBonded.cpp:18:40: note: in instantiation of member function 'ProtoMol::HarmDihedralSystemForce<ProtoMol::PeriodicBoundaryConditions>::evaluate' requested here ForceFactory::registerExemplar(new HarmDihedralSystemForce<PeriodicBoundaryConditions>()); ^ ./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify identifier to find this declaration in dependent base class void calcTorsion(const TBoundaryConditions &boundary, ^ In file included from registerForceExemplarsBonded.cpp:10: ./../framework/forces/HarmDihedralSystemForce.h:152:6: error: use of undeclared identifier 'calcTorsion' calcTorsion(boundary,topo->dihedrals[j], positions, forces,(*energies)[ScalarStructure::DIHEDRAL],energies); ^ this-> registerForceExemplarsBonded.cpp:18:40: note: in instantiation of member function 'ProtoMol::HarmDihedralSystemForce<ProtoMol::PeriodicBoundaryConditions>::parallelEvaluate' requested here ForceFactory::registerExemplar(new HarmDihedralSystemForce<PeriodicBoundaryConditions>()); ^ ./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify identifier to find this declaration in dependent base class void calcTorsion(const TBoundaryConditions &boundary, ^ 6 errors generated. *** Error code 1 Stop. make[4]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol/framework/factories *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol/framework *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol *** Error code 1 Stop. make: stopped in /usr/ports/biology/protomol
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201407270442.s6R4gPO8056593>