Date: Thu, 5 Jan 2017 08:52:51 GMT From: pkg-fallout@FreeBSD.org To: jrm@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-i386-default][math/R] Failed for R-3.3.2_7 in configure Message-ID: <201701050852.v058qpeB034978@beefy11.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jrm@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/math/R/Makefile 428057 2016-12-07 13:24:56Z gerald $ Log URL: http://beefy11.nyi.freebsd.org/data/head-i386-default/p430609_s311343/logs/R-3.3.2_7.log Build URL: http://beefy11.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p430609_s311343 Log: ====>> Building math/R build started at Thu Jan 5 08:51:22 UTC 2017 port directory: /usr/ports/math/R building for: FreeBSD head-i386-default-job-24 12.0-CURRENT FreeBSD 12.0-CURRENT r311343 i386 maintained by: jrm@FreeBSD.org Makefile ident: $FreeBSD: head/math/R/Makefile 428057 2016-12-07 13:24:56Z gerald $ Poudriere version: 3.1.14 Host OSVERSION: 1200017 Jail OSVERSION: 1200019 Job Id: 24 !!! Jail is newer than host. (Jail: 1200019, Host: 1200017) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 UNAME_v=FreeBSD 12.0-CURRENT r311343 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=i386 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-3.3.2_7 OSREL=12.0 _OSRELEASE=12.0-CURRENT PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=24 PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool MASTERNAME=head-i386-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1200019 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for R-3.3.2_7: ICU=on: Unicode support via ICU INFO=on: GNU info manuals LDOUBLE=on: Long double data type LETTER=off: US letter paper LIBR=on: Shared R library MEMPROF=off: Memory profiling via Rprofmem() and tracemem() NLS=on: Native Language Support RPROF=on: R profiling via Rprof() X11=on: X11 graphics device ====> Require GCC LTO=off: Use Link Time Optimization OPENMP=off: Parallel processing support via OpenMP ====> Require X11 GHOSTSCRIPT=on: Graphics device for bitmap files via Ghostscript JPEG=on: JPEG graphics device CAIROPANGO=on: Cairo graphics device and Pango multi-language text PNG=on: PNG graphics device TCLTK=on: Tcl/Tk GUI toolkit support TEXDOCS=off: Build/Install TeX-dependent documentation files TIFF=on: TIFF image format support ====> Options available for the single BLAS: you have to select exactly one of them ATLAS=off: ATLAS BLAS implementation OPENBLAS=off: OpenBLAS BLAS implementation NETLIB=off: Netlib BLAS implementation RBLAS=on: Use R-bundled BLAS implementation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --disable-java --with-readline rdocdir=/usr/local/share/doc/R --with-ICU --enable-long-double --enable-R-shlib --disable-memory-profiling --enable-R-profiling --with-x --without-blas --without-lapack --enable-BLAS-shlib --disable-lto --disable-openmp --with-jpeglib --with-cairo --with-libpng --with-tcltk --with-libtiff --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- r_cv_header_jpeglib_h=yes ac_cv_path_KPSEWHICH="" ac_cv_path_MAKEINDEX="" ac_cv_path_PDFLATEX="" ac_cv_path_PDFTEX="" ac_cv_path_TEX="" ac_cv_path_TEXI2DVI="" F77="gfortran49" FC="gfortran49" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc49" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc49" OBJC="cc" OBJCFLAGS=" -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -Wno-import -DLIBICONV_PLUG" ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/math/R/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R/work HOME=/wrkdirs/usr/ports/math/R/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/us r/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran49" FC="gfortran49" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc49" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc49" OBJC="cc" OBJCFLAGS=" -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -Wno-import -DLIBICONV_PLUG" XDG_DATA_HOME=/wrkdirs/usr/ports/math/R/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R/work HOME=/wrkdirs/usr/ports/math/R/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /us r/local/include -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc49 -L/usr/local/lib/gcc49 -B/usr/local/bin -L/usr/local/lib -fstack-protector" LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- ICU="" NO_ICU="@comment " INFO="" NO_INFO="@comment " LDOUBLE="" NO_LDOUBLE="@comment " LETTER="@comment " NO_LETTER="" LIBR="" NO_LIBR="@comment " MEMPROF="@comment " NO_MEMPROF="" NLS="" NO_NLS="@comment " RPROF="" NO_RPROF="@comment " X11="" NO_X11="@comment " ATLAS="@comment " NO_ATLAS="" OPENBLAS="@comment " NO_OPENBLAS="" NETLIB="@comment " NO_NETLIB="" RBLAS="" NO_RBLAS="@comment " LTO="@comment " NO_LTO="" OPENMP="@comment " NO_OPENMP="" GHOSTSCRIPT="" NO_GHOSTSCRIPT="@comment " JPEG="" NO_JPEG="@comment " CAIROPANGO="" NO_CAIROPANGO="@comment " PNG="" NO_PNG="@comment " TCLTK="" NO_TCLTK="@comment " TEXDOCS="@comment " NO_TEXDOCS="" TIFF="" NO_TIFF="@comment " GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PERL_VERSION=5.24.1 PERL_VER=5.24 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.24 DOCSDIR="share/doc/R" EXAMPLESDIR="share/examples/R" DATADIR="share/R" WWWDIR="www/R" ETCDIR="etc/R" --End PLIST_SUB-- --SUB_LIST-- ICU="" NO_ICU="@comment " INFO="" NO_INFO="@comment " LDOUBLE="" <snip> checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rint exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... (cached) yes checking sunmath.h usability... no checking sunmath.h presence... no checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... no checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking for matherr... no checking whether fcntl exists and is declared... (cached) yes checking whether getgrgid exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... (cached) yes checking whether sigaltstack exists and is declared... (cached) yes checking whether sigemptyset exists and is declared... (cached) yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... (cached) yes checking whether getline exists and is declared... (cached) yes checking whether setenv exists and is declared... (cached) yes checking whether unsetenv exists and is declared... (cached) yes checking whether getrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... (cached) yes checking whether stat exists and is declared... (cached) yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... (cached) yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... (cached) yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... (cached) yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... (cached) yes checking whether getcwd exists and is declared... (cached) yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... (cached) yes checking whether readlink exists and is declared... (cached) yes checking whether symlink exists and is declared... (cached) yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... no checking whether sched_getaffinity exists and is declared... no checking whether utime exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... no checking for putenv... (cached) yes checking whether putenv is declared... yes checking for vasprintf... (cached) yes checking whether vasprintf is declared... yes checking for mempcpy... no checking for realpath... (cached) yes checking whether realpath is declared... (cached) yes checking whether glob exists and is declared... yes checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... no checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... (cached) yes checking for strdup... (cached) yes checking for strncasecmp... (cached) yes checking whether mkdtemp is declared... (cached) yes checking whether strdup is declared... (cached) yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for __setfpucw... no checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... yes checking whether mktime works correctly outside 1902-2037... no checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking for iconvlist... yes checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for wchar.h... (cached) yes checking for wctype.h... (cached) yes checking whether mbrtowc exists and is declared... (cached) yes checking whether wcrtomb exists and is declared... (cached) yes checking whether wcscoll exists and is declared... (cached) yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... (cached) yes checking whether iswblank exists and is declared... (cached) yes checking whether wctype exists and is declared... (cached) yes checking whether iswctype exists and is declared... (cached) yes checking for wctrans_t... yes checking for mbstate_t... (cached) yes checking for ICU... yes checking for X... libraries /usr/local/lib, headers /usr/local/include checking whether -R must be followed by a space... neither works checking for gethostbyname... (cached) yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking X11/Intrinsic.h usability... yes checking X11/Intrinsic.h presence... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking X11/Xmu/Atoms.h usability... yes checking X11/Xmu/Atoms.h presence... yes checking for X11/Xmu/Atoms.h... yes checking for XmuInternAtom in -lXmu... yes checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for tclConfig.sh... no checking for tclConfig.sh in library (sub)directories... /usr/local/lib/tcl8.6/tclConfig.sh checking for tkConfig.sh... no checking for tkConfig.sh in library (sub)directories... /usr/local/lib/tk8.6/tkConfig.sh checking tcl.h usability... yes checking tcl.h presence... yes checking for tcl.h... yes checking tk.h usability... yes checking tk.h presence... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking for rpc/types.h... (cached) yes checking for rpc/xdr.h... yes checking for XDR support... yes checking for inflateInit2_ in -lz... yes checking for zlib.h... (cached) yes checking if zlib version >= 1.2.5... no checking whether zlib support suffices... configure: error: zlib library and headers are required ===> Script "configure" failed unexpectedly. Please report the problem to jrm@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/math/R/work/R-3.3.2/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/math/R
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