Date: Tue, 21 Oct 2008 15:26:53 GMT From: Julien Cigar <jcigar@ulb.ac.be> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/128271: blastall segfaults when output is set to XML (-m 7) Message-ID: <200810211526.m9LFQrPF053482@www.freebsd.org> Resent-Message-ID: <200810211530.m9LFU4RU067266@freefall.freebsd.org>
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>Number: 128271 >Category: ports >Synopsis: blastall segfaults when output is set to XML (-m 7) >Confidential: no >Severity: serious >Priority: high >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: sw-bug >Submitter-Id: current-users >Arrival-Date: Tue Oct 21 15:30:04 UTC 2008 >Closed-Date: >Last-Modified: >Originator: Julien Cigar >Release: 7.0-RELEASE >Organization: ULB >Environment: FreeBSD bccm-it.vub.ac.be 7.0-RELEASE-p4 FreeBSD 7.0-RELEASE-p4 #2: Wed Sep 10 09:56:56 CEST 2008 root@bccm-it.vub.ac.be:/usr/obj/usr/src/sys/CUSTOM i386 >Description: Hello, All is in the title, blastall segfaults on my machine when output is set to XML, default (text) output however works. >How-To-Repeat: jcigar@bccm-it rodentia % cat /tmp/98b284018c5e0f5dabd8eee9fc07def7.txt ATGACAAATTTTCGAAAAACACACCCACTACTCAAAATTATTAATAACACATTTATTGACCTCCCAACCCCCTCAAAT jcigar@bccm-it rodentia % blastall -p blastn -i /tmp/98b284018c5e0f5dabd8eee9fc07def7.txt -d rodentia.fasta -m 7 zsh: segmentation fault (core dumped) blastall -p blastn -i /tmp/98b284018c5e0f5dabd8eee9fc07def7.txt -d -m 7 >Fix: upgrade to ncbi-toolkit 2.2.18 (current version is very outdated) ? >Release-Note: >Audit-Trail: >Unformatted:
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