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Date:      Wed, 28 Aug 2019 12:46:05 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 120powerpc64-quarterly][biology/ugene] Failed for ugene-1.31.0_1 in build
Message-ID:  <201908281246.x7SCk5x4066790@pylon.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     h2+fbsdports@fsfe.org
Last committer: tijl@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q3/biology/ugene/Makefile 490472 2019-01-16 11:13:44Z tijl $
Log URL:        http://pylon.nyi.freebsd.org/data/120powerpc64-quarterly/509730/logs/ugene-1.31.0_1.log
Build URL:      http://pylon.nyi.freebsd.org/build.html?mastername=120powerpc64-quarterly&build=509730
Log:

=>> Building biology/ugene
build started at Wed Aug 28 12:39:43 UTC 2019
port directory: /usr/ports/biology/ugene
package name: ugene-1.31.0_1
building for: FreeBSD 120powerpc64-quarterly-job-09 12.0-RELEASE-p10 FreeBSD 12.0-RELEASE-p10 1200086 powerpc
maintained by: h2+fbsdports@fsfe.org
Makefile ident:      $FreeBSD: branches/2019Q3/biology/ugene/Makefile 490472 2019-01-16 11:13:44Z tijl $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300039
Jail OSVERSION: 1200086
Job Id: 09

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1200086
UNAME_v=FreeBSD 12.0-RELEASE-p10 1200086
UNAME_r=12.0-RELEASE-p10
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=120powerpc64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for ugene-1.31.0_1:
     DOCS=on: Install official UGENE documentation (PDF)
     OPENCL=off: Heterogeneous computing via OpenCL
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
h2+fbsdports@fsfe.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--with-qt-includes=/usr/local/include/qt5  --with-qt-libraries=/usr/local/lib/qt5  --with-extra-includes=/usr/local/include  --with-extra-libs=/usr/local/lib
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" QTDIR="/usr/local/lib/qt5" QMAKE="/usr/local/lib/qt5/bin/qmake"  MOC="/usr/local/lib/qt5/bin/moc" RCC="/usr/local/lib/qt5/bin/rcc" UIC="/usr/local/lib/qt5/bin/uic"  QMAKESPEC="/usr/local/lib/qt5/mkspecs/freebsd-$(ccver="$(c++ --version)"; case "$ccver" in *clang*) echo clang ;; *) echo g++ ;; esac)" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work  HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ugene/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work  HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ugene/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" QT_BINDIR="lib/qt5/bin" QT_INCDIR="include/qt5" QT_LIBDIR="lib/qt5" QT_ARCHDIR="lib/qt5" QT_PLUGINDIR="lib/qt5/plugins" QT_LIBEXECDIR="libexec/qt5" QT_IMPORTDIR="lib/qt5/imports" QT_QMLDIR="lib/qt5/qml" QT_DATADIR="share/qt5" QT_DOCDIR="share/doc/qt5" QT_L10NDIR="share/qt5/translations" QT_EXAMPLEDIR="share/examples/qt5" QT_TESTDIR="share/qt5/tests" QT_MKSPECDIR="lib/qt5/mkspecs" QT_QTCHOOSERDIR="etc/xdg/qtchooser" DEBUG="@comment " OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/ugene/manuals"  EXAMPLESDIR="share/examples/ugene"  DATADIR="share/ugene"  WWWDIR="www/ugene"  ETCDIR="etc/ugene"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/ugene DOCSDIR=/usr/local/share/ugene/manuals EXAMPLESDIR=/usr/local/share/examples/ugene  WWWDIR=/usr/local/www/ugene ETCDIR=/usr/local/etc/ugene
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT=	true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
_OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64
OPSYS=FreeBSD
_OSRELEASE=12.0-RELEASE-p10
OSREL=12.0
OSVERSION=1200086
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2+ accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ugene-1.31.0_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.11.1.txz
[120powerpc64-quarterly-job-09] Installing pkg-1.11.1...
[120powerpc64-quarterly-job-09] Extracting pkg-1.11.1: .......... done
===>   ugene-1.31.0_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ugene-1.31.0_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2+ accepted by the user
===> Fetching all distfiles required by ugene-1.31.0_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2+ accepted by the user
===> Fetching all distfiles required by ugene-1.31.0_1 for building
=> SHA256 Checksum OK for ugene/ugene-1.31.0.tar.gz.
=> SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf.
=> SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf.
=> SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2+ accepted by the user
===> Fetching all distfiles required by ugene-1.31.0_1 for building
===>  Extracting for ugene-1.31.0_1
=> SHA256 Checksum OK for ugene/ugene-1.31.0.tar.gz.
=> SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf.
=> SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf.
=> SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf.
cp -f -p /portdistfiles/ugene/*.pdf /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/data/manuals
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for ugene-1.31.0_1
===>  Applying FreeBSD patches for ugene-1.31.0_1
===========================================================================
=======================<phase: build-depends  >============================
===>   ugene-1.31.0_1 depends on executable: update-desktop-database - not found
===>   Installing existing package /packages/All/desktop-file-utils-0.23.txz
[120powerpc64-quarterly-job-09] Installing desktop-file-utils-0.23...
<snip>
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/sitecon/sitecon.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/umuscle/umuscle.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/hmm2/hmm2.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/gor4/gor4.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/psipred/psipred.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/primer3/primer3.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/phylip/phylip.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/kalign/kalign.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/ptools/ptools.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/variants/variants.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/ngs_reads_classification/ngs_reads_classification.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/CoreTests/CoreTests.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/GUITestBase/GUITestBase.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/annotator/annotator.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/api_tests/api_tests.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/biostruct3d_view/biostruct3d_view.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/browser_support/browser_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/chroma_view/chroma_view.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/circular_view/circular_view.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/clark_support/clark_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dbi_bam/dbi_bam.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/diamond_support/diamond_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dna_export/dna_export.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dna_flexibility/dna_flexibility.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dna_graphpack/dna_graphpack.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dna_stat/dna_stat.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dotplot/dotplot.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/enzymes/enzymes.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
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/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/external_tool_support/external_tool_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/genome_aligner/genome_aligner.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/kraken_support/kraken_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/linkdata_support/linkdata_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/orf_marker/orf_marker.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/pcr/pcr.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/perf_monitor/perf_monitor.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
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/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/query_designer/query_designer.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/remote_blast/remote_blast.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
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/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/repeat_finder/repeat_finder.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
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/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/smith_waterman/smith_waterman.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
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Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/test_runner/test_runner.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
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Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/weight_matrix/weight_matrix.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
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/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
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Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/workflow_designer/workflow_designer.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
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Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/opencl_support/opencl_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
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===========================================================================
=======================<phase: build          >============================
===>  Building for ugene-1.31.0_1
cd src/libs_3rdparty/qscore/ && ( test -e Makefile || /usr/local/lib/qt5/bin/qmake -o Makefile /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/libs_3rdparty/qscore/qscore.pro INSTALL_PREFIX=/usr/local UGENE_INSTALL_DATA=/usr/local/share/ugene INSTALL_MANDIR=/usr/local/man LRELEASE=/usr/local/lib/qt5/bin/lrelease LUPDATE=/usr/local/lib/qt5/bin/lupdate -spec /usr/local/lib/qt5/mkspecs/freebsd-g++ QMAKE_CC=cc QMAKE_CXX=c++ QMAKE_LINK_C=cc QMAKE_LINK_C_SHLIB=cc QMAKE_LINK=c++ QMAKE_LINK_SHLIB=c++ 'QMAKE_CFLAGS=-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing ' 'QMAKE_CXXFLAGS=-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  ' 'QMAKE_LFLAGS= -fstack-protector-strong ' QMAKE_LIBS= QMAKE_CFLAGS_DEBUG= QMAKE_CFLAGS_RELEASE= QMAKE_CXXFLAGS_DEBUG= QMAKE_CXXFLAGS_RELEASE= PREFIX=/usr/local CONFIG+=release 'CONFIG-=debug separate_debug_info' ) && /usr/bin/make -f Makefile release
/usr/bin/make -f Makefile.Release
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=gnu++11 -w -pthread -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.31.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=31 -DUGENE_VER_PATCH=0 -DUGENE_X86 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DNDEBUG -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_XML_LIB -DQT_SCRIPT_LIB -DQT_CORE_LIB -I. -Isrc -I_tmp -I../../core/src -I../../include -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtNetwork -isystem /usr/local/include/qt5/QtXml -isystem /usr/local/include/qt5/QtScript -isystem /usr/local/include/qt5/QtCore -I_tmp/moc/release -isystem /usr/local/include/libdrm -isystem /usr/local/include -I/usr/local/lib/qt5/mkspecs/freebsd-g++ -o _tmp/obj/release/QScoreAdapter.o src/QScoreAdapter.cpp
cc1plus: error: unrecognized command line option "-std=gnu++11"
*** Error code 1

Stop.
make[3]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/libs_3rdparty/qscore
*** Error code 1

Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/libs_3rdparty/qscore
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ugene



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