From nobody Sun May 5 15:00:22 2024 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4VXSQH0rPDz5K5d8; Sun, 05 May 2024 15:00:23 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4VXSQG6NPqz4mKK; Sun, 5 May 2024 15:00:22 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1714921222; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=Qaw1iafrVNiP4iKjK6ehCp22lSdKxLJxG/cMaBADIys=; b=mHfaPezIZMKpPKt1Q6R2qBBCQcV51L+SiaX6rRHfXCX0t1FvmmGj2Zn3MESoYPin9SUV+i zjLL7MRJC/Eqv7q1UYrTKlKenjUedP4JwAzAcFcBiVco+MoSe+jgia+2iFqCbD+Nh+ZcHj Qo+ZjdBg7/gbScf1LQq2bDQXtxxnlw0wh0tSgqYSfqVgMeO76GPWp2uYQ2qWMmBmMut5mq nNS4uDEkrjX8I0f4XAAAERqyhXyyVJRi3Nmg1zj52AuhUPmzmAG3yXPus/OWdt6LDRHUDC Vd8T4rL7m8lxvFT/bBKpRWgzp8TBey5iBcqy2TZzqXo3/O2D5gub5NmyzaBP5g== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1714921222; a=rsa-sha256; cv=none; b=BJr8MD7+w5wisu56RrnQwIcQk7uuOmQsZqM08vQPVErm+gwRsGN7Imn3bWyPi/fIU1z2eU EbJaSiZAEAx3JSH8ZGrJh7/vyGL3DcOGOoR0QYKFo2XHzIQ6+CrI0G9H2u5teWzv7HGnmg aK+YcQ3bKhy3EspGTRQwntQbiJxg1HDNvruyBmzTlvHpSkv8Mi0eDoNF+h3i0r7SP01sdF +vGwVyaJwR/BSCz2rQD1lT24UkQWVF+GEVNavq1O779qUzDrXgPiPvBOCcJnkZaOTwgc2F f5+gSxQl+jDrJ9xeC4TsD+MY3bqE8t/7+Wn1SeQOQrAXEZho2EWRvYkbzgcAig== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1714921222; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=Qaw1iafrVNiP4iKjK6ehCp22lSdKxLJxG/cMaBADIys=; b=ogWSLwH5SaKf/dadJN4f2Pkrevlx5RRJQoAzAnk8Qx4/nymDSSVmscAZObgMUXReVfo60G kveQAmSFvelaTwTZqJz1P+txMonbIdYpraQgDVGMRfIZjWaTDzj033m36aXV1GyPzzEQS0 k8chIOeNHV5oObg1P8mT/+zpunEbPucsJ0OukdbwOrIecFcqA6EHjg1TTgnojpSeZSZgRU w2hiQx6Jo9nks+RPsyKuhk67np3nfqeO4//sXIjDorZraqfBHOgE3fOBs/RIIEgFEOu+Qb bb850WHmR3FwiqRBXru90I0+1A44x5GC3s1jPIX/zUX9LJ2h+xRovveEVlW/vg== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4VXSQG5zhlzJ5V; Sun, 5 May 2024 15:00:22 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 445F0MO5055764; Sun, 5 May 2024 15:00:22 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 445F0MY5055761; Sun, 5 May 2024 15:00:22 GMT (envelope-from git) Date: Sun, 5 May 2024 15:00:22 GMT Message-Id: <202405051500.445F0MY5055761@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 94ae98221aa5 - main - biology/star: Use EXTRACT_AFTER_ARGS to omit unused htslib dir List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-all@freebsd.org Sender: owner-dev-commits-ports-all@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 94ae98221aa55d9dfac0cbd7a6a68d189d090222 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=94ae98221aa55d9dfac0cbd7a6a68d189d090222 commit 94ae98221aa55d9dfac0cbd7a6a68d189d090222 Author: Jason W. Bacon AuthorDate: 2024-05-05 14:58:47 +0000 Commit: Jason W. Bacon CommitDate: 2024-05-05 14:58:47 +0000 biology/star: Use EXTRACT_AFTER_ARGS to omit unused htslib dir Reduces I/O during builds PR: 278751 Reported by: diizzy --- biology/star/Makefile | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/biology/star/Makefile b/biology/star/Makefile index 968caa762551..8e01f3198cd4 100644 --- a/biology/star/Makefile +++ b/biology/star/Makefile @@ -26,13 +26,14 @@ USE_GCC= yes USE_GITHUB= yes GH_ACCOUNT= alexdobin +EXTRACT_AFTER_ARGS= --exclude ${GH_PROJECT_DEFAULT}-${GH_TAGNAME_EXTRACT}/source/htslib --no-same-owner --no-same-permissions + WRKSRC_SUBDIR= source MAKE_FLAGS= HTSLIB='' CXXFLAGS_SIMD="" PLIST_FILES= bin/STAR post-patch: - ${RM} -rf ${WRKSRC}/htslib ${REINPLACE_CMD} \ -e 's|"htslib/htslib/sam.h"||g' \ -e 's|"htslib/htslib/kstring.h"||g' \