Date: Thu, 17 Apr 2014 10:45:29 GMT From: pkg-fallout-builder@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [REL - 83amd64-default][science/gromacs] Failed for gromacs-4.6.5_2 in build Message-ID: <201404171045.s3HAjTmN061618@beefy2.isc.freebsd.org>
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Maintainer: ports@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/science/gromacs/Makefile 347809 2014-03-10 20:55:20Z gerald $ Log URL: http://beefy2.isc.freebsd.org/bulk/83amd64-default/2014-04-17_02h02m50s/logs/gromacs-4.6.5_2.log Build URL: http://beefy2.isc.freebsd.org/bulk/83amd64-default/2014-04-17_02h02m50s Log: ====>> Building science/gromacs build started at Thu Apr 17 10:44:23 UTC 2014 port directory: /usr/ports/science/gromacs building for: FreeBSD 83amd64-default-job-12 8.3-RELEASE-p15 FreeBSD 8.3-RELEASE-p15 amd64 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/science/gromacs/Makefile 347809 2014-03-10 20:55:20Z gerald $ Poudriere version: 3.1-pre Host OSVERSION: 1100013 Jail OSVERSION: 803000 ---Begin Environment--- OSVERSION=803000 UNAME_v=FreeBSD 8.3-RELEASE-p15 UNAME_r=8.3-RELEASE-p15 FTP_PASSIVE_MODE=YES BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/build/83amd64-default/ref PKG_EXT=txz tpid=20731 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=gromacs-4.6.5_2 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add OLDPWD=/usr/local/poudriere/data/build/83amd64-default/ref/poudriere/rdeps PWD=/usr/local/poudriere/data/build/83amd64-default/ref/poudriere/pool MASTERNAME=83amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for gromacs-4.6.5_2: ATLAS=off: Use ATLAS for BLAS and LAPACK FLOAT=on: Use single instead of double precision GSL=on: Extra analysis using math/gsl SIMD=off: Use CPU-specific optimizations X11=on: X11 (graphics) support ====> MPI (Message Passing Interface) support: you can only select none or one of them MPICH=off: MPI support using net/mpich2 OMPI=off: MPI support using net/openmpi ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PKG_CONFIG=pkgconf SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- ATLAS="@comment " NO_ATLAS="" FLOAT="" NO_FLOAT="@comment " GSL="" NO_GSL="@comment " SIMD="@comment " NO_SIMD="" X11="" NO_X11="@comment " MPICH="@comment " NO_MPICH="" OMPI="@comment " NO_OMPI="" SUFFIX_D="" SUFFIX_MPI="" CMAKE_BUILD_TYPE="release" OSREL=8.3 PREFIX=%D LOCALBASE=/usr/local PORTDOCS="" PORTEXAMPLES="" PORTDATA="" LIB32DIR=lib PERL_VERSION=5.16.3 PERL_VER=5.16 PERL_ARCH=mach PERL5_MAN3=lib/perl5/5.16/man/man3 SITE_PERL=lib/perl5/site_perl/5.16 DOCSDIR="share/doc/gromacs" EXAMPLESDIR="share/examples/gromacs" DATADIR="share/gromacs" WWWDIR="www/gromacs" ETCDIR="etc/gromacs" --End PLIST_SUB-- --SUB_LIST-- ATLAS="@comment " NO_ATLAS="" FLOAT="" NO_FLOAT="@comment " GSL="" NO_GSL="@comment " SIMD="@comment " NO_SIMD="" X11="" NO_X11="@comment " MPICH="@comment " NO_MPICH="" OMPI="@comment " NO_OMPI="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gromacs DOCSDIR=/usr/local/share/doc/gromacs EXAMPLESDIR=/usr/local/share/examples/gromacs WWWDIR=/usr/local/www/gromacs ETCDIR=/usr/local/etc/gromacs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for gromacs-4.6.5_2 =======================<phase: check-sanity >============================ ===> License LGPL21 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> gromacs-4.6.5_2 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.7_2.txz Installing pkg-1.2.7_2... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of gromacs-4.6.5_2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-4.6.5_2 for building =========================================================================== =======================<phase: checksum >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-4.6.5_2 for building => SHA256 Checksum OK for gromacs-4.6.5.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-4.6.5_2 for building ===> Extracting for gromacs-4.6.5_2 => SHA256 Checksum OK for gromacs-4.6.5.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for gromacs-4.6.5_2 ===> Applying FreeBSD patches for gromacs-4.6.5_2 =========================================================================== =======================<phase: build-depends >============================ ===> gromacs-4.6.5_2 depends on package: fftw3>0 - not found pkg-static: No package(s) matching fftw3 ===> Verifying install for fftw3>0 in /usr/ports/math/fftw3 ===> Installing existing package /packages/All/fftw3-3.3.3_1.txz Installing fftw3-3.3.3_1... done ===> Returning to build of gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on file: /usr/local/bin/cmake - not found <snip> cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/txtdump.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/txtdump.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/sighandler.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/sighandler.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/sighandler.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gbutil.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gbutil.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gbutil.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/wman.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/wman.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/wman.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/smalloc.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/smalloc.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/smalloc.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 16 [ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/calch.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/calch.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/calch.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/warninp.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/warninp.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/warninp.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/statutil.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/statutil.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/statutil.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmxfio.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmxfio.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/atomprop.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/atomprop.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/atomprop.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_random.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_random.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_random.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_sort.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_sort.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_sort.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/topsort.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/topsort.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/topsort.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/splitter.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/splitter.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/splitter.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 17 [ 6%] Building C object src/gmxlib/CMakeFiles/gmx.dir/sparsematrix.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/sparsematrix.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/sparsematrix.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 6%] Building C object src/gmxlib/CMakeFiles/gmx.dir/shift_util.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/shift_util.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/shift_util.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 6%] Building C object src/gmxlib/CMakeFiles/gmx.dir/chargegroup.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/chargegroup.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/chargegroup.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 6%] Building C object src/gmxlib/CMakeFiles/gmx.dir/string2.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/string2.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/string2.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 6%] Building C object src/gmxlib/CMakeFiles/gmx.dir/maths.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/maths.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/maths.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 6%] Building C object src/gmxlib/CMakeFiles/gmx.dir/tcontrol.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/tcontrol.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/tcontrol.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 6%] Building C object src/gmxlib/CMakeFiles/gmx.dir/pdbio.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/pdbio.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/pdbio.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 6%] Building C object src/gmxlib/CMakeFiles/gmx.dir/rbin.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/rbin.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/rbin.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 18 [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/xdrd.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/xdrd.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/xdrd.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio_rw.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmxfio_rw.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmxfio_rw.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/crecipdata.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/crecipdata.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/crecipdata.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/inputrec.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/inputrec.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/inputrec.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/pargs.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/pargs.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/pargs.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/cinvsqrtdata.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/cinvsqrtdata.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/cinvsqrtdata.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio_asc.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmxfio_asc.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmxfio_asc.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/oenv.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/oenv.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/oenv.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/symtab.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/symtab.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/symtab.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 19 [ 8%] Building C object src/gmxlib/CMakeFiles/gmx.dir/ffscanf.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/ffscanf.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/ffscanf.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 8%] Building C object src/gmxlib/CMakeFiles/gmx.dir/matio.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/matio.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/matio.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 8%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nrama.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nrama.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nrama.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 8%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nrjac.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nrjac.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nrjac.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 8%] Building C object src/gmxlib/CMakeFiles/gmx.dir/filenm.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/filenm.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/filenm.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 8%] Building C object src/gmxlib/CMakeFiles/gmx.dir/writeps.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/writeps.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/writeps.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 8%] Building C object src/gmxlib/CMakeFiles/gmx.dir/main.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/main.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/main.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 8%] Building C object src/gmxlib/CMakeFiles/gmx.dir/mtop_util.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/mtop_util.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/mtop_util.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 8%] Building C object src/gmxlib/CMakeFiles/gmx.dir/strdb.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/strdb.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/strdb.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 20 [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/rmpbc.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/rmpbc.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/rmpbc.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/xvgr.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/xvgr.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/xvgr.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/random.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/random.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/random.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/futil.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/futil.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/futil.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/orires.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/orires.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/orires.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_cpuid.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_cpuid.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_cpuid.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/sfactor.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/sfactor.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/sfactor.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/checkpoint.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/checkpoint.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/checkpoint.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 21 [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/princ.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/princ.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/princ.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/typedefs.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/typedefs.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/typedefs.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/rando.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/rando.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/rando.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/do_fit.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/do_fit.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/do_fit.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/ifunc.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/ifunc.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/ifunc.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/copyrite.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/copyrite.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/copyrite.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_matrix.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_matrix.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_matrix.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/trnio.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/trnio.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/trnio.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nrnb.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nrnb.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nrnb.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 22 [ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/md_logging.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/md_logging.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/md_logging.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/ewald_util.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/ewald_util.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/ewald_util.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/invblock.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/invblock.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/invblock.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/mvdata.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/mvdata.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/mvdata.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_cyclecounter.c.o cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_cyclecounter.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_cyclecounter.c {standard input}: Assembler messages: {standard input}:25: Error: no such instruction: `rdtscp' {standard input}:77: Error: no such instruction: `rdtscp' *** Error code 1 Stop in /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5. *** Error code 1 Stop in /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5. *** Error code 1 Stop in /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5. *** Error code 1 Stop in /usr/ports/science/gromacs. ===> Cleaning for gromacs-4.6.5_2
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