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Date:      Sat, 23 Dec 2023 17:28:39 GMT
From:      Joseph Mingrone <jrm@FreeBSD.org>
To:        ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org
Subject:   git: 3b90027c760a - main - biology/hyphy: Update to 2.5.58
Message-ID:  <202312231728.3BNHSdxK074878@gitrepo.freebsd.org>

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The branch main has been updated by jrm:

URL: https://cgit.FreeBSD.org/ports/commit/?id=3b90027c760a3591b2757fab96ab0e04298c62a9

commit 3b90027c760a3591b2757fab96ab0e04298c62a9
Author:     Joseph Mingrone <jrm@FreeBSD.org>
AuthorDate: 2023-12-23 17:15:10 +0000
Commit:     Joseph Mingrone <jrm@FreeBSD.org>
CommitDate: 2023-12-23 17:28:25 +0000

    biology/hyphy: Update to 2.5.58
    
    Changes:        https://github.com/veg/hyphy/releases/tag/2.5.58
    Sponsored by:   The FreeBSD Foundation
---
 biology/hyphy/Makefile  | 2 +-
 biology/hyphy/distinfo  | 6 +++---
 biology/hyphy/pkg-plist | 2 ++
 3 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/biology/hyphy/Makefile b/biology/hyphy/Makefile
index ce766fc506a9..0f614818b254 100644
--- a/biology/hyphy/Makefile
+++ b/biology/hyphy/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	hyphy
-DISTVERSION=	2.5.57
+DISTVERSION=	2.5.58
 CATEGORIES=	biology
 
 MAINTAINER=	jrm@FreeBSD.org
diff --git a/biology/hyphy/distinfo b/biology/hyphy/distinfo
index c505ef07992a..53b75fc008b5 100644
--- a/biology/hyphy/distinfo
+++ b/biology/hyphy/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1699999920
-SHA256 (veg-hyphy-2.5.57_GH0.tar.gz) = 5412331ff40b58fa69f34ad67f3431e662e9c2002f5d035f47225f26b8e3533c
-SIZE (veg-hyphy-2.5.57_GH0.tar.gz) = 5583575
+TIMESTAMP = 1703351280
+SHA256 (veg-hyphy-2.5.58_GH0.tar.gz) = f448d4a95bdb356eb6b1384b0c507a79f152511ad76bb67170ab5b8eb2798231
+SIZE (veg-hyphy-2.5.58_GH0.tar.gz) = 5593070
diff --git a/biology/hyphy/pkg-plist b/biology/hyphy/pkg-plist
index 9f46ee3e53d6..3491aaa1b191 100644
--- a/biology/hyphy/pkg-plist
+++ b/biology/hyphy/pkg-plist
@@ -147,6 +147,7 @@ bin/hyphy
 %%DATADIR%%/TemplateBatchFiles/ModelTest.bf
 %%DATADIR%%/TemplateBatchFiles/MolClockAllRoots.bf
 %%DATADIR%%/TemplateBatchFiles/MolecularClock.bf
+%%DATADIR%%/TemplateBatchFiles/MSS-joint-fitter.bf
 %%DATADIR%%/TemplateBatchFiles/MSS-selector-2.bf
 %%DATADIR%%/TemplateBatchFiles/MSS-selector.bf
 %%DATADIR%%/TemplateBatchFiles/NeighborJoining.bf
@@ -191,6 +192,7 @@ bin/hyphy
 %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
 %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf
 %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/contrast-meme.bf
+%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/error-filter.bf
 %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf
 %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
 %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf



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