Date: Mon, 23 Nov 2020 16:13:15 +0000 (UTC) From: Piotr Kubaj <pkubaj@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r556113 - head/biology/tabixpp Message-ID: <202011231613.0ANGDFKS061966@repo.freebsd.org>
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Author: pkubaj Date: Mon Nov 23 16:13:15 2020 New Revision: 556113 URL: https://svnweb.freebsd.org/changeset/ports/556113 Log: biology/tabixpp: fix build on GCC architectures c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -c tabix.cpp -Ihtslib In file included from /usr/local/include/htslib/hts.h:37, from /usr/local/include/htslib/tbx.h:30, from tabix.hpp:5, from tabix.cpp:1: /usr/local/include/htslib/kstring.h: In function 'int ks_resize(kstring_t*, size_t)': /usr/local/include/htslib/kstring.h:149: error: 'SIZE_MAX' was not declared in this scope tabix.cpp: In constructor 'Tabix::Tabix(std::string&)': tabix.cpp:15: warning: 'bgzf_is_bgzf' is deprecated (declared at /usr/local/include/htslib/bgzf.h:263) tabix.cpp:15: warning: 'bgzf_is_bgzf' is deprecated (declared at /usr/local/include/htslib/bgzf.h:263) Modified: head/biology/tabixpp/Makefile Modified: head/biology/tabixpp/Makefile ============================================================================== --- head/biology/tabixpp/Makefile Mon Nov 23 15:17:26 2020 (r556112) +++ head/biology/tabixpp/Makefile Mon Nov 23 16:13:15 2020 (r556113) @@ -15,7 +15,7 @@ LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libhts.so:biology/htslib -USES= localbase:ldflags +USES= compiler:c11 localbase:ldflags USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= ekg
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