Date: Fri, 11 Aug 2023 20:44:47 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 67773b0db360 - main - biology/fasda: Update to 0.1.4 Message-ID: <202308112044.37BKilMC055173@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=67773b0db360dbd23843d82d0d63ba78da9e9457 commit 67773b0db360dbd23843d82d0d63ba78da9e9457 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2023-08-11 20:39:06 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2023-08-11 20:39:06 +0000 biology/fasda: Update to 0.1.4 Add --debug Replace --map-gene with --feature-type for more flexibility Use extended REs for gff3 feature selection (default = RNA$|transcript$|gene_segment$, same as transcript in GTF) Add --output-dir Support |-separated ID aliases (report last alias) Support outsourcing abundance calculation (default = stringtie) Several bug fixes and minor enhancements Changes: https://github.com/auerlab/fasda/releases --- biology/fasda/Makefile | 3 ++- biology/fasda/distinfo | 6 +++--- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/biology/fasda/Makefile b/biology/fasda/Makefile index e7dc7ed5a3a7..3c9823658748 100644 --- a/biology/fasda/Makefile +++ b/biology/fasda/Makefile @@ -1,5 +1,5 @@ PORTNAME= fasda -DISTVERSION= 0.1.3 +DISTVERSION= 0.1.4 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -10,6 +10,7 @@ LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libxtend.so:devel/libxtend libbiolibc.so:biology/biolibc +RUN_DEPENDS= stringtie>0:biology/stringtie USES= localbase USE_GITHUB= yes diff --git a/biology/fasda/distinfo b/biology/fasda/distinfo index 388673460271..88743d780fa6 100644 --- a/biology/fasda/distinfo +++ b/biology/fasda/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1686347287 -SHA256 (auerlab-fasda-0.1.3_GH0.tar.gz) = 1e1fb36327b63c53cd4286dbd6edfd89cf2bdc0899fe8d8b748b01fbb1d91d47 -SIZE (auerlab-fasda-0.1.3_GH0.tar.gz) = 59513 +TIMESTAMP = 1691756858 +SHA256 (auerlab-fasda-0.1.4_GH0.tar.gz) = 8e1b1536ff3c551c16b6ddca543378343e055a9b067ef5038e2b2f1fb2e874b9 +SIZE (auerlab-fasda-0.1.4_GH0.tar.gz) = 65254
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