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Date:      Fri, 25 Sep 2020 01:03:03 +0000 (UTC)
From:      Joseph Mingrone <jrm@FreeBSD.org>
To:        ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org
Subject:   svn commit: r549977 - head/biology/py-biom-format
Message-ID:  <202009250103.08P133of055723@repo.freebsd.org>

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Author: jrm
Date: Fri Sep 25 01:03:03 2020
New Revision: 549977
URL: https://svnweb.freebsd.org/changeset/ports/549977

Log:
  biology/py-biom-format: Update to version 2.1.8
  
  Upstream changes:
  https://github.com/biocore/biom-format/releases/tag/2.1.8

Modified:
  head/biology/py-biom-format/Makefile   (contents, props changed)
  head/biology/py-biom-format/distinfo   (contents, props changed)

Modified: head/biology/py-biom-format/Makefile
==============================================================================
--- head/biology/py-biom-format/Makefile	Thu Sep 24 23:58:13 2020	(r549976)
+++ head/biology/py-biom-format/Makefile	Fri Sep 25 01:03:03 2020	(r549977)
@@ -1,8 +1,7 @@
 # $FreeBSD$
 
 PORTNAME=	biom-format
-PORTVERSION=	2.1.7
-PORTREVISION=	3
+PORTVERSION=	2.1.8
 CATEGORIES=	biology python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -12,26 +11,19 @@ COMMENT=	Biological Observation Matrix (BIOM) Format P
 
 LICENSE=	BSD3CLAUSE
 
-DEPRECATED=	Uses deprecated version of python
-EXPIRATION_DATE=	2020-08-15
-
 BUILD_DEPENDS=	${PYNUMPY}
 RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}click>0:devel/py-click@${PY_FLAVOR} \
 		${PYNUMPY} \
 		${PYTHON_PKGNAMEPREFIX}future>=0.16.0:devel/py-future@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}scipy>=0.13.0:science/py-scipy@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}scipy>=1.3.1:science/py-scipy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pandas>=0.20.0:math/py-pandas@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}h5py>=2.2.0:science/py-h5py@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}six>=1.10.0:devel/py-six@${PY_FLAVOR}
 
-USES=		python:-3.6
-USE_PYTHON=	autoplist concurrent distutils
+USES=		python:3.6+
+USE_PYTHON=	autoplist concurrent cython distutils
 
 .include <bsd.port.pre.mk>
-
-.if ${PYTHON_REL} < 3000
-RUN_DEPENDS+=	${PYTHON_PKGNAMEPREFIX}pyqi>0:devel/py-pyqi@${PY_FLAVOR}
-.endif
 
 post-extract:
 	${RM} -r ${WRKSRC}/tests

Modified: head/biology/py-biom-format/distinfo
==============================================================================
--- head/biology/py-biom-format/distinfo	Thu Sep 24 23:58:13 2020	(r549976)
+++ head/biology/py-biom-format/distinfo	Fri Sep 25 01:03:03 2020	(r549977)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1538769748
-SHA256 (biom-format-2.1.7.tar.gz) = b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4
-SIZE (biom-format-2.1.7.tar.gz) = 11820666
+TIMESTAMP = 1579317018
+SHA256 (biom-format-2.1.8.tar.gz) = 4d8813f84f7a79ee8c367e6ef57e154a121198b3979b81c74e6514668b756827
+SIZE (biom-format-2.1.8.tar.gz) = 12206773



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