From owner-dev-commits-ports-all@freebsd.org Sun Apr 25 20:37:13 2021 Return-Path: Delivered-To: dev-commits-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id CF8615E666D; Sun, 25 Apr 2021 20:37:13 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4FT0FP5KGxz4VB6; Sun, 25 Apr 2021 20:37:13 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id A54141AB01; Sun, 25 Apr 2021 20:37:13 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 13PKbDma076788; Sun, 25 Apr 2021 20:37:13 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 13PKbDrh076787; Sun, 25 Apr 2021 20:37:13 GMT (envelope-from git) Date: Sun, 25 Apr 2021 20:37:13 GMT Message-Id: <202104252037.13PKbDrh076787@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Po-Chuan Hsieh Subject: git: a15ff33a6825 - main - science/py-skrebate: Add py-skrebate 0.62 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: sunpoet X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: a15ff33a682545cfdd76f7c545d7da95b462d271 Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commit messages for all branches of the ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 25 Apr 2021 20:37:13 -0000 The branch main has been updated by sunpoet: URL: https://cgit.FreeBSD.org/ports/commit/?id=a15ff33a682545cfdd76f7c545d7da95b462d271 commit a15ff33a682545cfdd76f7c545d7da95b462d271 Author: Po-Chuan Hsieh AuthorDate: 2021-04-25 20:11:26 +0000 Commit: Po-Chuan Hsieh CommitDate: 2021-04-25 20:35:07 +0000 science/py-skrebate: Add py-skrebate 0.62 This package includes a scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning. These Relief-Based algorithms (RBAs) are designed for feature weighting/selection as part of a machine learning pipeline (supervised learning). Presently this includes the following core RBAs: ReliefF, SURF, SURF*, MultiSURF*, and MultiSURF. Additionally, an implementation of the iterative TuRF mechanism and VLSRelief is included. WWW: https://github.com/EpistasisLab/scikit-rebate --- science/Makefile | 1 + science/py-skrebate/Makefile | 24 ++++++++++++++++++++++++ science/py-skrebate/distinfo | 3 +++ science/py-skrebate/pkg-descr | 9 +++++++++ 4 files changed, 37 insertions(+) diff --git a/science/Makefile b/science/Makefile index 24c2e04d14c0..03a8a852d714 100644 --- a/science/Makefile +++ b/science/Makefile @@ -292,6 +292,7 @@ SUBDIR += py-scoria SUBDIR += py-segregation SUBDIR += py-segyio + SUBDIR += py-skrebate SUBDIR += py-spaghetti SUBDIR += py-spglib SUBDIR += py-tensorflow diff --git a/science/py-skrebate/Makefile b/science/py-skrebate/Makefile new file mode 100644 index 000000000000..40a43c5924ec --- /dev/null +++ b/science/py-skrebate/Makefile @@ -0,0 +1,24 @@ +# Created by: Po-Chuan Hsieh + +PORTNAME= skrebate +PORTVERSION= 0.62 +CATEGORIES= science python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= Relief-based feature selection algorithms + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=0,1:math/py-numpy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0:science/py-scikit-learn@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>=0:science/py-scipy@${PY_FLAVOR} + +USES= python:3.6+ +USE_PYTHON= autoplist concurrent distutils + +NO_ARCH= yes + +.include diff --git a/science/py-skrebate/distinfo b/science/py-skrebate/distinfo new file mode 100644 index 000000000000..44f2074cd6b6 --- /dev/null +++ b/science/py-skrebate/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1619198369 +SHA256 (skrebate-0.62.tar.gz) = b20dad4dc52f650e1f7960151314840f34251222cae0a78ac23d9f6d377ca558 +SIZE (skrebate-0.62.tar.gz) = 19835 diff --git a/science/py-skrebate/pkg-descr b/science/py-skrebate/pkg-descr new file mode 100644 index 000000000000..2006c2996184 --- /dev/null +++ b/science/py-skrebate/pkg-descr @@ -0,0 +1,9 @@ +This package includes a scikit-learn-compatible Python implementation of ReBATE, +a suite of Relief-based feature selection algorithms for Machine Learning. These +Relief-Based algorithms (RBAs) are designed for feature weighting/selection as +part of a machine learning pipeline (supervised learning). Presently this +includes the following core RBAs: ReliefF, SURF, SURF*, MultiSURF*, and +MultiSURF. Additionally, an implementation of the iterative TuRF mechanism and +VLSRelief is included. + +WWW: https://github.com/EpistasisLab/scikit-rebate