Date: Thu, 15 Aug 2019 04:28:11 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv7-default][biology/seqan-apps] Failed for seqan-apps-2.4.0_7 in build Message-ID: <201908150428.x7F4SBZk026814@beefy16.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: h2+fbsdports@fsfe.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/biology/seqan-apps/Makefile 507372 2019-07-26 20:46:53Z gerald $ Log URL: http://beefy16.nyi.freebsd.org/data/head-armv7-default/p508487_s350827/logs/seqan-apps-2.4.0_7.log Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p508487_s350827 Log: =>> Building biology/seqan-apps build started at Thu Aug 15 03:13:04 UTC 2019 port directory: /usr/ports/biology/seqan-apps package name: seqan-apps-2.4.0_7 building for: FreeBSD head-armv7-default-job-18 13.0-CURRENT FreeBSD 13.0-CURRENT 1300039 arm maintained by: h2+fbsdports@fsfe.org Makefile ident: $FreeBSD: head/biology/seqan-apps/Makefile 507372 2019-07-26 20:46:53Z gerald $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300031 Jail OSVERSION: 1300039 Job Id: 18 !!! Jail is newer than host. (Jail: 1300039, Host: 1300031) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300039 UNAME_v=FreeBSD 13.0-CURRENT 1300039 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for seqan-apps-2.4.0_7: ====> Options available for the radio ARCH: you can only select none or one of them SSE4=off: Use SSE4 and POPCNT instructions AVX2=off: Use SSE4, AVX2 and POPCNT instructions NATIVE=off: Use all available instruction sets (-march=native) ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- h2+fbsdports@fsfe.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqan-apps/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqan-apps/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="gcc9" CFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -fno-strict-aliasing " CPP="cpp9" CPPFLAGS="" LDFLAG S=" -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 " LIBS="" CXX="g++9" CXXFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" RM_I386="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqan-apps" EXAMPLESDIR="share/examples/seqan-apps" DATADIR="share/seqan-apps" WWWDIR="www/seqan-apps" ETCDIR="etc/seqan-apps" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqan-apps DOCSDIR=/usr/local/share/doc/seqan-apps EXAMPLESDIR=/usr/local/share/examples/seqan-apps WWWDIR=/usr/local/www/seqan-apps ETCDIR=/usr/local/etc/seqan-apps --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300039 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> seqan-apps-2.4.0_7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz [head-armv7-default-job-18] Installing pkg-1.11.1... [head-armv7-default-job-18] Extracting pkg-1.11.1: .......... done ===> seqan-apps-2.4.0_7 depends on file: /usr/local/sbin/pkg - found <snip> /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned char, long long unsigned int, unsigned int> >'} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned char, long long unsigned int, unsigned int> >'} changed in GCC 9.1 /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:253:25: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned char, long long unsigned int, unsigned int> >'} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >*; _Distance = int; _Tp = Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >, const seqan::Tag<ReadSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:214:5: note: parameter passing for argument of type 'Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >' changed in GCC 9.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >*; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >, const seqan::Tag<ReadSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:253:25: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >*; _Distance = int; _Tp = Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >, const seqan::Tag<ContigSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:214:5: note: parameter passing for argument of type 'Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >' changed in GCC 9.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >*; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >, const seqan::Tag<ContigSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:253:25: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned char, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match<Limits<short unsigned int, long long unsigned int, unsigned int> >*; _Distance = int; _Tp = Match<Limits<short unsigned int, long long unsigned int, unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<short unsigned int, long long unsigned int, unsigned int> >, const seqan::Tag<ReadSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:214:5: note: parameter passing for argument of type 'Match<Limits<short unsigned int, long long unsigned int, unsigned int> >' changed in GCC 9.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = Match<Limits<short unsigned int, long long unsigned int, unsigned int> >*; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<short unsigned int, long long unsigned int, unsigned int> >, const seqan::Tag<ReadSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<short unsigned int, long long unsigned int, unsigned int> >'} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<short unsigned int, long long unsigned int, unsigned int> >'} changed in GCC 9.1 /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:253:25: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<short unsigned int, long long unsigned int, unsigned int> >'} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match<Limits<short unsigned int, long long unsigned int, unsigned int> >*; _Distance = int; _Tp = Match<Limits<short unsigned int, long long unsigned int, unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<short unsigned int, long long unsigned int, unsigned int> >, const seqan::Tag<ContigSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:214:5: note: parameter passing for argument of type 'Match<Limits<short unsigned int, long long unsigned int, unsigned int> >' changed in GCC 9.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = Match<Limits<short unsigned int, long long unsigned int, unsigned int> >*; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<short unsigned int, long long unsigned int, unsigned int> >, const seqan::Tag<ContigSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<short unsigned int, long long unsigned int, unsigned int> >'} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<short unsigned int, long long unsigned int, unsigned int> >'} changed in GCC 9.1 /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:253:25: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<short unsigned int, long long unsigned int, unsigned int> >'} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >*; _Distance = int; _Tp = Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >, const seqan::Tag<ReadSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:214:5: note: parameter passing for argument of type 'Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >' changed in GCC 9.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >*; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >, const seqan::Tag<ReadSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:253:25: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >*; _Distance = int; _Tp = Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >, const seqan::Tag<ContigSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:214:5: note: parameter passing for argument of type 'Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >' changed in GCC 9.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >*; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >, const seqan::Tag<ContigSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:253:25: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<short unsigned int, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match<Limits<unsigned int, long long unsigned int, unsigned int> >*; _Distance = int; _Tp = Match<Limits<unsigned int, long long unsigned int, unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<unsigned int, long long unsigned int, unsigned int> >, const seqan::Tag<ReadSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:214:5: note: parameter passing for argument of type 'Match<Limits<unsigned int, long long unsigned int, unsigned int> >' changed in GCC 9.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = Match<Limits<unsigned int, long long unsigned int, unsigned int> >*; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<unsigned int, long long unsigned int, unsigned int> >, const seqan::Tag<ReadSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned int, long long unsigned int, unsigned int> >'} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned int, long long unsigned int, unsigned int> >'} changed in GCC 9.1 /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:253:25: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned int, long long unsigned int, unsigned int> >'} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match<Limits<unsigned int, long long unsigned int, unsigned int> >*; _Distance = int; _Tp = Match<Limits<unsigned int, long long unsigned int, unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<unsigned int, long long unsigned int, unsigned int> >, const seqan::Tag<ContigSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:214:5: note: parameter passing for argument of type 'Match<Limits<unsigned int, long long unsigned int, unsigned int> >' changed in GCC 9.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = Match<Limits<unsigned int, long long unsigned int, unsigned int> >*; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<unsigned int, long long unsigned int, unsigned int> >, const seqan::Tag<ContigSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned int, long long unsigned int, unsigned int> >'} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned int, long long unsigned int, unsigned int> >'} changed in GCC 9.1 /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:253:25: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned int, long long unsigned int, unsigned int> >'} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >*; _Distance = int; _Tp = Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >, const seqan::Tag<ReadSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:214:5: note: parameter passing for argument of type 'Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >' changed in GCC 9.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >*; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >, const seqan::Tag<ReadSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:253:25: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >*; _Distance = int; _Tp = Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >, const seqan::Tag<ContigSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:214:5: note: parameter passing for argument of type 'Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >' changed in GCC 9.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >*; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<MatchSorter<Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >, const seqan::Tag<ContigSize_> > >]': /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:342:22: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 /usr/local/lib/gcc9/include/c++/bits/stl_heap.h:253:25: note: parameter passing for argument of type '_ValueType' {aka 'Match<Limits<unsigned int, long long unsigned int, long long unsigned int> >'} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: out of memory allocating 33554372 bytes after a total of 0 bytes ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/biology/seqan-apps
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