Date: Mon, 5 Dec 2005 11:35:32 -0300 (ART) From: Fernan Aguero <fernan@iib.unsam.edu.ar> To: FreeBSD-gnats-submit@FreeBSD.org Cc: Kris Kennaway <kris@obsecurity.org> Subject: ports/89976: unbreak biology/seaview Message-ID: <200512051435.jB5EZWvG068293@pi.iib.unsam.edu.ar> Resent-Message-ID: <200512051440.jB5Ee8BK065509@freefall.freebsd.org>
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>Number: 89976 >Category: ports >Synopsis: unbreak biology/seaview >Confidential: no >Severity: serious >Priority: medium >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Mon Dec 05 14:40:05 GMT 2005 >Closed-Date: >Last-Modified: >Originator: Fernan Aguero >Release: FreeBSD 4.10-RELEASE i386 >Organization: IIB-UNSAM >Environment: FreeBSD pi.iib.unsam.edu.ar 4.10-RELEASE FreeBSD 4.10-RELEASE #0: Wed May 26 12:56:43 ART 2004 fernan@pi.iib.unsam.edu.ar:/usr/obj/usr/src/sys/PI i386 >Description: Update biology/seaview to the latest version. Unbreak (checksum mismatch problem due to upstream distfile name being constant through version updates) CC goes to Kris, the pointy hat owner because of: [ports-i386@FreeBSD.org: seaview-2004.12.16 failed on i386 6] >How-To-Repeat: >Fix: --- seaview.diff begins here --- diff -ruN /usr/ports/biology/seaview/Makefile seaview/Makefile --- /usr/ports/biology/seaview/Makefile Sun Dec 4 09:56:09 2005 +++ seaview/Makefile Mon Dec 5 08:35:30 2005 @@ -7,7 +7,7 @@ # PORTNAME= seaview -PORTVERSION= 2004.12.16 +PORTVERSION= 2005.13.07 CATEGORIES= biology MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/ DISTNAME= ${PORTNAME} @@ -18,8 +18,6 @@ COMMENT= Multiple DNA/protein sequence alignment editor LIB_DEPENDS= fltk.1:${PORTSDIR}/x11-toolkits/fltk - -BROKEN= Size mismatch USE_X_PREFIX= yes NO_WRKSUBDIR= yes diff -ruN /usr/ports/biology/seaview/distinfo seaview/distinfo --- /usr/ports/biology/seaview/distinfo Mon Dec 20 06:02:41 2004 +++ seaview/distinfo Mon Dec 5 07:54:17 2005 @@ -1,2 +1,2 @@ -MD5 (seaview-2004.12.16/seaview.tar) = 2786e787fb45f4d7f065aeed3c4a7903 -SIZE (seaview-2004.12.16/seaview.tar) = 561152 +MD5 (seaview-2005.13.07/seaview.tar) = 0971b3485351f6a1f56a7b56ead2359c +SIZE (seaview-2005.13.07/seaview.tar) = 595968 diff -ruN /usr/ports/biology/seaview/files/patch-Makefile seaview/files/patch-Makefile --- /usr/ports/biology/seaview/files/patch-Makefile Wed Dec 31 21:00:00 1969 +++ seaview/files/patch-Makefile Mon Dec 5 08:31:20 2005 @@ -0,0 +1,25 @@ +--- Makefile.orig Wed Apr 6 05:54:30 2005 ++++ Makefile Mon Dec 5 08:31:05 2005 +@@ -1,18 +1,15 @@ +-FLTK = ../fltk +-PDF = ../PDFlib-Lite-6.0.1/libs/pdflib +-X11 = /usr/X11R6 + CXX = g++ + +-CFLAGS = -Dunix -U__APPLE__ -c $(OPT) -I$(FLTK) -I$(PDF) -I$(X11)/include ++CFLAGS = -Dunix -c $(OPT) -I$(X11BASE)/include -I$(LOCALBASE)/include + + + OBJECTS = seaview.o pdf.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o chooser_plus.o resource.o nexus.o old_file_chooser.o + + + seaview : $(OBJECTS) +- $(CXX) -o $@ $(OBJECTS) -L$(FLTK)/lib -lfltk \ +- -Xlinker -Bstatic -L$(PDF)/.libs -lpdf -Xlinker -Bdynamic \ +- -L$(X11)/lib -lX11 -lm ++ $(CXX) -o $@ $(OBJECTS) -L$(LOCALBASE)/lib -lfltk \ ++ -Xlinker -Bstatic -lpdf -Xlinker -Bdynamic \ ++ -L$(X11BASE)/lib -lX11 -lm + strip $@ + + --- seaview.diff ends here --- >Release-Note: >Audit-Trail: >Unformatted:
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