From owner-svn-ports-all@freebsd.org Sat Aug 29 08:34:52 2020 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id E02DF3D1ABB; Sat, 29 Aug 2020 08:34:52 +0000 (UTC) (envelope-from tcberner@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4BdqXD5W8Rz47DR; Sat, 29 Aug 2020 08:34:52 +0000 (UTC) (envelope-from tcberner@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id A02E722D7C; Sat, 29 Aug 2020 08:34:52 +0000 (UTC) (envelope-from tcberner@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 07T8YqYZ061850; Sat, 29 Aug 2020 08:34:52 GMT (envelope-from tcberner@FreeBSD.org) Received: (from tcberner@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 07T8YqdX061848; Sat, 29 Aug 2020 08:34:52 GMT (envelope-from tcberner@FreeBSD.org) Message-Id: <202008290834.07T8YqdX061848@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: tcberner set sender to tcberner@FreeBSD.org using -f From: "Tobias C. Berner" Date: Sat, 29 Aug 2020 08:34:52 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r546885 - in head/biology: grappa lagan phylip X-SVN-Group: ports-head X-SVN-Commit-Author: tcberner X-SVN-Commit-Paths: in head/biology: grappa lagan phylip X-SVN-Commit-Revision: 546885 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 29 Aug 2020 08:34:52 -0000 Author: tcberner Date: Sat Aug 29 08:34:51 2020 New Revision: 546885 URL: https://svnweb.freebsd.org/changeset/ports/546885 Log: biology/: Fix build with clang11 and deprecate ports@ ports Modified: head/biology/grappa/Makefile head/biology/lagan/Makefile head/biology/phylip/Makefile Modified: head/biology/grappa/Makefile ============================================================================== --- head/biology/grappa/Makefile Sat Aug 29 08:34:27 2020 (r546884) +++ head/biology/grappa/Makefile Sat Aug 29 08:34:51 2020 (r546885) @@ -14,6 +14,11 @@ LICENSE= GPLv2 USES= gmake +CFLAGS+= -fcommon + +EXPIRATION_DATE= 2020-09-30 +DEPRECATED= Unmaintained and dead upstream + PLIST_FILES= bin/grappa bin/invdist bin/distmat do-install: Modified: head/biology/lagan/Makefile ============================================================================== --- head/biology/lagan/Makefile Sat Aug 29 08:34:27 2020 (r546884) +++ head/biology/lagan/Makefile Sat Aug 29 08:34:51 2020 (r546885) @@ -18,6 +18,11 @@ USE_PERL5= run SHEBANG_FILES= slagan.pl MAKE_JOBS_UNSAFE=yes +CFLAGS+= -fcommon + +EXPIRATION_DATE= 2020-09-30 +DEPRECATED= Unmaintained and dead upstream + SUB_FILES= pkg-message SUB_LIST= LAGAN_DIR="${LAGAN_DIR}" Modified: head/biology/phylip/Makefile ============================================================================== --- head/biology/phylip/Makefile Sat Aug 29 08:34:27 2020 (r546884) +++ head/biology/phylip/Makefile Sat Aug 29 08:34:51 2020 (r546885) @@ -26,6 +26,11 @@ MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \ DLIBS="-L${LOCALBASE}/lib -lX11 -lXaw -lXt -lm" USE_LDCONFIG= yes +CFLAGS+= -fcommon + +EXPIRATION_DATE= 2020-09-30 +DEPRECATED= Unmaintained and outdated + PORTDOCS= * OPTIONS_DEFINE= DOCS