Date: Thu, 3 Feb 2022 12:38:59 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 2b1ef5b34e0e - main - biology/py-dna-features-viewer: Python lib to visualize DNA features Message-ID: <202202031238.213CcxsB074811@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=2b1ef5b34e0ee73661c0b9755f4e6806de1095d5 commit 2b1ef5b34e0ee73661c0b9755f4e6806de1095d5 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2022-02-03 12:37:38 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2022-02-03 12:37:38 +0000 biology/py-dna-features-viewer: Python lib to visualize DNA features DNA Features Viewer is a Python library to visualize DNA features, e.g. from GenBank or Gff files. DNA Features Viewer can plot sequence maps linearly or circularly, with or without nucleotide sequence and amino-acid sequences. The plotter automatically produces clear plots even for sequences with many overlapping features and long labels. The library plays well with Matplotlib and Biopython, and the figures can be saved in different formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS interfaces. --- biology/py-dna-features-viewer/Makefile | 20 ++++++++++++++++++++ biology/py-dna-features-viewer/distinfo | 3 +++ biology/py-dna-features-viewer/pkg-descr | 12 ++++++++++++ 3 files changed, 35 insertions(+) diff --git a/biology/py-dna-features-viewer/Makefile b/biology/py-dna-features-viewer/Makefile new file mode 100644 index 000000000000..7ea1d63d46e6 --- /dev/null +++ b/biology/py-dna-features-viewer/Makefile @@ -0,0 +1,20 @@ +PORTNAME= dna-features-viewer +DISTVERSION= 3.1.0 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} +DISTNAME= dna_features_viewer-${PORTVERSION} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Python library to visualize DNA features, e.g. GenBank or Gff files + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENCE.txt + +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=3:math/py-matplotlib@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}biopython>0:biology/py-biopython@${PY_FLAVOR} + +USES= python +USE_PYTHON= autoplist distutils + +.include <bsd.port.mk> diff --git a/biology/py-dna-features-viewer/distinfo b/biology/py-dna-features-viewer/distinfo new file mode 100644 index 000000000000..8131a2c7de96 --- /dev/null +++ b/biology/py-dna-features-viewer/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1643841661 +SHA256 (dna_features_viewer-3.1.0.tar.gz) = 1430bbd861b4fa4a1855fb9554577bc1b2e969a6d1921882bb2de56902cd63ca +SIZE (dna_features_viewer-3.1.0.tar.gz) = 34795 diff --git a/biology/py-dna-features-viewer/pkg-descr b/biology/py-dna-features-viewer/pkg-descr new file mode 100644 index 000000000000..367dce2c930c --- /dev/null +++ b/biology/py-dna-features-viewer/pkg-descr @@ -0,0 +1,12 @@ +DNA Features Viewer is a Python library to visualize DNA features, e.g. +from GenBank or Gff files. + +DNA Features Viewer can plot sequence maps linearly or circularly, with +or without nucleotide sequence and amino-acid sequences. The plotter +automatically produces clear plots even for sequences with many +overlapping features and long labels. The library plays well with +Matplotlib and Biopython, and the figures can be saved in different +formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS +interfaces. + +WWW: https://pypi.python.org/project/dna-features-viewer/
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