Date: Mon, 16 Oct 2017 12:06:23 -0400 From: Dan Langille <dan@langille.org> To: Baptiste Daroussin <bapt@FreeBSD.org> Cc: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: Re: svn commit: r451982 - in head/biology: ariadne biococoa crux plink ssaha tRNAscan-SE Message-ID: <72F25EE2-2CAB-4D73-A4DF-53297F43A482@langille.org> In-Reply-To: <201710131114.v9DBErFV052601@repo.freebsd.org> References: <201710131114.v9DBErFV052601@repo.freebsd.org>
next in thread | previous in thread | raw e-mail | index | archive | help
biology/biococoa did not get marked as BROKEN. Is that intentional? I discovered this while investigating FreshPorts fallout for = https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D223037 = <https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D223037>; --=20 Dan Langille - BSDCan / PGCon dan@langille.org > On Oct 13, 2017, at 7:14 AM, Baptiste Daroussin <bapt@FreeBSD.org> = wrote: >=20 > Author: bapt > Date: Fri Oct 13 11:14:53 2017 > New Revision: 451982 > URL: https://svnweb.freebsd.org/changeset/ports/451982 >=20 > Log: > Mark as broken ports with no public distfiles >=20 > Modified: > head/biology/ariadne/Makefile > head/biology/biococoa/Makefile > head/biology/crux/Makefile > head/biology/plink/Makefile > head/biology/ssaha/Makefile > head/biology/tRNAscan-SE/Makefile >=20 > Modified: head/biology/ariadne/Makefile > = =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D > --- head/biology/ariadne/Makefile Fri Oct 13 11:14:32 2017 = (r451981) > +++ head/biology/ariadne/Makefile Fri Oct 13 11:14:53 2017 = (r451982) > @@ -11,6 +11,8 @@ COMMENT=3D Programs to compare protein sequences = and pro >=20 > WRKSRC=3D ${WRKDIR}/SRC-${PORTVERSION} >=20 > +BROKEN=3D No public distfiles > + > PLIST_FILES+=3D bin/ariadne bin/prospero > USES=3D gmake tar:Z > PORTDOCS=3D README >=20 > Modified: head/biology/biococoa/Makefile > = =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D > --- head/biology/biococoa/Makefile Fri Oct 13 11:14:32 2017 = (r451981) > +++ head/biology/biococoa/Makefile Fri Oct 13 11:14:53 2017 = (r451982) > @@ -4,7 +4,7 @@ PORTNAME=3D biococoa > PORTVERSION=3D 2.2.2 > PORTREVISION=3D 3 > CATEGORIES=3D biology gnustep > -MASTER_SITES=3D http://bioinformatics.org/biococoa/downloads/ = DEBIAN/pool/main/b/biococoa.app > +MASTER_SITES=3D http://bioinformatics.org/biococoa/downloads/ > DISTNAME=3D biococoa-${PORTVERSION}-src > EXTRACT_SUFX=3D .tgz >=20 >=20 > Modified: head/biology/crux/Makefile > = =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D > --- head/biology/crux/Makefile Fri Oct 13 11:14:32 2017 = (r451981) > +++ head/biology/crux/Makefile Fri Oct 13 11:14:53 2017 = (r451982) > @@ -13,6 +13,7 @@ COMMENT=3D Software toolkit for phylogenetic = inference > LICENSE=3D BSD2CLAUSE BSD3CLAUSE > LICENSE_COMB=3D multi >=20 > +BROKEN=3D No public distfiles > BROKEN_aarch64=3D Fails to link: ImportError: = /lib/libgcc_s.so.1: version GCC_4.5.0 required by = /usr/local/lib/gcc5/libgfortran.so.3 not found > BROKEN_armv6=3D Fails to link: ImportError: = /usr/local/lib/gcc49/libgfortran.so.3: Undefined symbol = "__aeabi_ldivmod" >=20 >=20 > Modified: head/biology/plink/Makefile > = =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D > --- head/biology/plink/Makefile Fri Oct 13 11:14:32 2017 = (r451981) > +++ head/biology/plink/Makefile Fri Oct 13 11:14:53 2017 = (r451982) > @@ -11,6 +11,8 @@ DISTNAME=3D ${PORTNAME}-${PORTVERSION}-src > MAINTAINER=3D bacon4000@gmail.com > COMMENT=3D Whole genome association analysis toolset >=20 > +BROKEN=3D no public distfiles > + > LICENSE=3D GPLv2 >=20 > LIB_DEPENDS=3D liblapack.so:math/lapack >=20 > Modified: head/biology/ssaha/Makefile > = =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D > --- head/biology/ssaha/Makefile Fri Oct 13 11:14:32 2017 = (r451981) > +++ head/biology/ssaha/Makefile Fri Oct 13 11:14:53 2017 = (r451982) > @@ -11,6 +11,8 @@ DISTNAME=3D ${PORTNAME}_v${PORTVERSION:S/.//} > MAINTAINER=3D ports@FreeBSD.org > COMMENT=3D Very fast matching and alignment of DNA sequences >=20 > +BROKEN=3D No public distfiles > + > NO_WRKSUBDIR=3D yes > BUILD_WRKSRC=3D ${WRKSRC}/Binary >=20 >=20 > Modified: head/biology/tRNAscan-SE/Makefile > = =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D > --- head/biology/tRNAscan-SE/Makefile Fri Oct 13 11:14:32 2017 = (r451981) > +++ head/biology/tRNAscan-SE/Makefile Fri Oct 13 11:14:53 2017 = (r451982) > @@ -10,6 +10,8 @@ MASTER_SITES=3D = ftp://selab.janelia.org/pub/software/tRN > MAINTAINER=3D ports@FreeBSD.org > COMMENT=3D Improved tool for transfer RNA detection >=20 > +BROKEN=3D No public distfiles > + > USES=3D perl5 tar:Z > MAKE_ARGS=3D BINDIR=3D"${PREFIX}/bin" \ > LIBDIR=3D"${DATADIR}" \ > _______________________________________________ > svn-ports-head@freebsd.org mailing list > https://lists.freebsd.org/mailman/listinfo/svn-ports-head > To unsubscribe, send any mail to = "svn-ports-head-unsubscribe@freebsd.org"
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?72F25EE2-2CAB-4D73-A4DF-53297F43A482>