From owner-freebsd-pkg-fallout@FreeBSD.ORG Sat Apr 19 03:05:32 2014 Return-Path: Delivered-To: pkg-fallout@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 601EF42F for ; Sat, 19 Apr 2014 03:05:32 +0000 (UTC) Received: from beefy1.isc.freebsd.org (beefy1.isc.freebsd.org [IPv6:2001:4f8:3:ffe0:4072:0:16:38]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 49FF510B4; Sat, 19 Apr 2014 03:05:32 +0000 (UTC) Received: from beefy1.isc.freebsd.org (localhost [127.0.0.1]) by beefy1.isc.freebsd.org (8.14.8/8.14.8) with ESMTP id s3J35WVW092202; Sat, 19 Apr 2014 03:05:32 GMT (envelope-from pkg-fallout-builder@FreeBSD.org) Received: (from root@localhost) by beefy1.isc.freebsd.org (8.14.8/8.14.8/Submit) id s3J35Wvl092200; Sat, 19 Apr 2014 03:05:32 GMT (envelope-from pkg-fallout-builder@FreeBSD.org) Date: Sat, 19 Apr 2014 03:05:32 GMT From: pkg-fallout-builder@FreeBSD.org Message-Id: <201404190305.s3J35Wvl092200@beefy1.isc.freebsd.org> To: sangwoos@gmail.com Subject: [REL - head-i386-default][biology/protomol] Failed for protomol-2.0.3_8 in build Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.17 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 19 Apr 2014 03:05:32 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: sangwoos@gmail.com Last committer: mat@FreeBSD.org Ident: $FreeBSD: head/biology/protomol/Makefile 340722 2014-01-22 17:00:46Z mat $ Log URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2014-04-18_20h03m12s/logs/protomol-2.0.3_8.log Build URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2014-04-18_20h03m12s Log: ====>> Building biology/protomol build started at Sat Apr 19 03:00:10 UTC 2014 port directory: /usr/ports/biology/protomol building for: FreeBSD head-i386-default-job-03 11.0-CURRENT FreeBSD 11.0-CURRENT r264257 i386 maintained by: sangwoos@gmail.com Makefile ident: $FreeBSD: head/biology/protomol/Makefile 340722 2014-01-22 17:00:46Z mat $ Poudriere version: 3.1-pre Host OSVERSION: 1100013 Jail OSVERSION: 1100018 !!! Jail is newer than host. (Jail: 1100018, Host: 1100013) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=1100018 UNAME_v=FreeBSD 11.0-CURRENT r264257 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/build/head-i386-default/ref PKG_EXT=txz tpid=68860 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=protomol-2.0.3_8 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add OLDPWD=/usr/local/poudriere/data/build/head-i386-default/ref/poudriere/rdeps PWD=/usr/local/poudriere/data/build/head-i386-default/ref/poudriere/pool MASTERNAME=head-i386-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for protomol-2.0.3_8: GLUT=on: GLUT support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --without-irix_mipspro_mpi --with-glut=yes --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing -L/usr/local/lib" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local PORTDOCS="" PORTEXAMPLES="" PORTDATA="" LIB32DIR=lib DOCSDIR="share/doc/protomol" EXAMPLESDIR="share/examples/protomol" DATADIR="share/protomol" WWWDIR="www/protomol" ETCDIR="etc/protomol" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/protomol DOCSDIR=/usr/local/share/doc/protomol EXAMPLESDIR=/usr/local/share/examples/protomol WWWDIR=/usr/local/www/protomol ETCDIR=/usr/local/etc/protomol --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for protomol-2.0.3_8 =================================================== =========================================================================== =================================================== ===> protomol-2.0.3_8 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.7_2.txz Installing pkg-1.2.7_2... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of protomol-2.0.3_8 =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by protomol-2.0.3_8 for building =========================================================================== =================================================== ===> Fetching all distfiles required by protomol-2.0.3_8 for building => SHA256 Checksum OK for protomol-2.0.3-tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by protomol-2.0.3_8 for building ===> Extracting for protomol-2.0.3_8 => SHA256 Checksum OK for protomol-2.0.3-tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for protomol-2.0.3_8 ===> Applying FreeBSD patches for protomol-2.0.3_8 =========================================================================== =================================================== ===> protomol-2.0.3_8 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/xmu.pc in /usr/ports/x11-toolkits/libXmu ===> Installing existing package /packages/All/libXmu-1.1.2,1.txz Installing libXmu-1.1.2,1...Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done Installing libXau-1.0.8...Installing xproto-7.0.25... done done Installing libXdmcp-1.1.1... done Installing libxcb-1.9.3...Installing libpthread-stubs-0.3_4... done Installing libxml2-2.8.0_3... done done done Installing libXext-1.3.2,1...Installing xextproto-7.2.1... done done Installing libXt-1.1.4,1...Installing libSM-1.2.2,1...Installing libICE-1.0.8,1... done done done done ===> Returning to build of protomol-2.0.3_8 ===> protomol-2.0.3_8 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found ===> protomol-2.0.3_8 depends on file: /usr/local/libdata/pkgconfig/sm.pc - found ===> protomol-2.0.3_8 depends on file: /usr/local/libdata/pkgconfig/ice.pc - found ===> protomol-2.0.3_8 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> protomol-2.0.3_8 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> protomol-2.0.3_8 depends on file: /usr/local/libdata/pkgconfig/xi.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/xi.pc in /usr/ports/x11/libXi ===> Installing existing package /packages/All/libXi-1.7.2,1.txz Installing libXi-1.7.2,1...Installing inputproto-2.3... done Installing libXfixes-5.0.1...Installing fixesproto-5.0... done done done ===> Returning to build of protomol-2.0.3_8 =========================================================================== =================================================== ===> protomol-2.0.3_8 depends on shared library: libpng15.so - not found ===> Verifying for libpng15.so in /usr/ports/graphics/png ===> Installing existing package /packages/All/png-1.5.18.txz Installing png-1.5.18... done ===> Returning to build of protomol-2.0.3_8 ===> protomol-2.0.3_8 depends on shared library: libjpeg.so - not found ===> Verifying for libjpeg.so in /usr/ports/graphics/jpeg ===> Installing existing package /packages/All/jpeg-8_4.txz Installing jpeg-8_4... done ===> Returning to build of protomol-2.0.3_8 ===> protomol-2.0.3_8 depends on shared library: libtiff.so - not found ===> Verifying for libtiff.so in /usr/ports/graphics/tiff ===> Installing existing package /packages/All/tiff-4.0.3.txz Installing tiff-4.0.3...Installing freeglut-2.8.1...Installing libGLU-9.0.0...Installing libGL-9.1.7...Installing dri2proto-2.8... done Installing expat-2.1.0... done Installing libXdamage-1.1.4...Installing damageproto-1.2.1... done done Installing libXxf86vm-1.1.3...Installing xf86vidmodeproto-2.3.1... done done Installing libdrm-2.4.50...Installing libpciaccess-0.13.2...Installing pciids-20140402... done done c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierShake.o `test -f 'ModifierShake.cpp' || echo './'`ModifierShake.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierRattle.o `test -f 'ModifierRattle.cpp' || echo './'`ModifierRattle.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNPTShake.o `test -f 'ModifierNPTShake.cpp' || echo './'`ModifierNPTShake.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNPTRattle.o `test -f 'ModifierNPTRattle.cpp' || echo './'`ModifierNPTRattle.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNVTShake.o `test -f 'ModifierNVTShake.cpp' || echo './'`ModifierNVTShake.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNVTRattle.o `test -f 'ModifierNVTRattle.cpp' || echo './'`ModifierNVTRattle.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o PLeapfrogIntegrator.o `test -f 'PLeapfrogIntegrator.cpp' || echo './'`PLeapfrogIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o MOLLYIntegrator.o `test -f 'MOLLYIntegrator.cpp' || echo './'`MOLLYIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o UmbrellaIntegrator.o `test -f 'UmbrellaIntegrator.cpp' || echo './'`UmbrellaIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o MTSIntegrator.o `test -f 'MTSIntegrator.cpp' || echo './'`MTSIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o NoseNVTLeapfrogIntegrator.o `test -f 'NoseNVTLeapfrogIntegrator.cpp' || echo './'`NoseNVTLeapfrogIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o PaulTrapIntegrator.o `test -f 'PaulTrapIntegrator.cpp' || echo './'`PaulTrapIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o LangevinImpulseIntegrator.o `test -f 'LangevinImpulseIntegrator.cpp' || echo './'`LangevinImpulseIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o StandardIntegrator.o `test -f 'StandardIntegrator.cpp' || echo './'`StandardIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o STSIntegrator.o `test -f 'STSIntegrator.cpp' || echo './'`STSIntegrator.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' rm -f libintegrators.a ar cru libintegrators.a ModifierMetaShake.o ModifierMetaRattle.o ModifierMetaRattleShake.o NPTVerletIntegrator.o NVTVerletIntegrator.o BSplineMOLLYIntegrator.o EquilibriumMOLLYIntegrator.o DihedralHMCIntegrator.o DLMCIntegrator.o ShadowHMCIntegrator.o HMCIntegrator.o MCIntegrator.o ImpulseIntegrator.o Integrator.o IntegratorDefinition.o LeapfrogIntegrator.o DMDLeapfrogIntegrator.o BBKIntegrator.o ModifierShake.o ModifierRattle.o ModifierNPTShake.o ModifierNPTRattle.o ModifierNVTShake.o ModifierNVTRattle.o PLeapfrogIntegrator.o MOLLYIntegrator.o UmbrellaIntegrator.o MTSIntegrator.o NoseNVTLeapfrogIntegrator.o PaulTrapIntegrator.o LangevinImpulseIntegrator.o StandardIntegrator.o STSIntegrator.o NPTVerletIntegrator.o NVTVerletIntegrator.o ranlib libintegrators.a Making all in frontend c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o HelpTextFactory.o `test -f 'HelpTextFactory.cpp' || echo './'`HelpTextFactory.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o ForceFactoryDetails.o `test -f 'ForceFactoryDetails.cpp' || echo './'`ForceFactoryDetails.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o InputPosVel.o `test -f 'InputPosVel.cpp' || echo './'`InputPosVel.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o InputPosVelType.o `test -f 'InputPosVelType.cpp' || echo './'`InputPosVelType.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o IntegratorFactoryDetails.o `test -f 'IntegratorFactoryDetails.cpp' || echo './'`IntegratorFactoryDetails.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' IntegratorFactoryDetails.cpp:178:13: warning: '&&' within '||' [-Wlogical-op-parentheses] i > 0 && dynamic_cast(prototype))){ ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ IntegratorFactoryDetails.cpp:178:13: note: place parentheses around the '&&' expression to silence this warning i > 0 && dynamic_cast(prototype))){ ^ ( ) 1 warning generated. c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o Output.o `test -f 'Output.cpp' || echo './'`Output.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputCache.o `test -f 'OutputCache.cpp' || echo './'`OutputCache.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputCollection.o `test -f 'OutputCollection.cpp' || echo './'`OutputCollection.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputDCDTrajectory.o `test -f 'OutputDCDTrajectory.cpp' || echo './'`OutputDCDTrajectory.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputDiffusion.o `test -f 'OutputDiffusion.cpp' || echo './'`OutputDiffusion.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputDihedrals.o `test -f 'OutputDihedrals.cpp' || echo './'`OutputDihedrals.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputEnergies.o `test -f 'OutputEnergies.cpp' || echo './'`OutputEnergies.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFactoryDetails.o `test -f 'OutputFactoryDetails.cpp' || echo './'`OutputFactoryDetails.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFile.o `test -f 'OutputFile.cpp' || echo './'`OutputFile.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalXYZBinPos.o `test -f 'OutputFinalXYZBinPos.cpp' || echo './'`OutputFinalXYZBinPos.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalXYZBinVel.o `test -f 'OutputFinalXYZBinVel.cpp' || echo './'`OutputFinalXYZBinVel.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalXYZPos.o `test -f 'OutputFinalXYZPos.cpp' || echo './'`OutputFinalXYZPos.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalPDBPos.o `test -f 'OutputFinalPDBPos.cpp' || echo './'`OutputFinalPDBPos.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalXYZVel.o `test -f 'OutputFinalXYZVel.cpp' || echo './'`OutputFinalXYZVel.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputMomentum.o `test -f 'OutputMomentum.cpp' || echo './'`OutputMomentum.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputPaulTrap.o `test -f 'OutputPaulTrap.cpp' || echo './'`OutputPaulTrap.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputPDBFramePos.o `test -f 'OutputPDBFramePos.cpp' || echo './'`OutputPDBFramePos.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputScreen.o `test -f 'OutputScreen.cpp' || echo './'`OutputScreen.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputTemperatures.o `test -f 'OutputTemperatures.cpp' || echo './'`OutputTemperatures.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputXYZTrajectoryForce.o `test -f 'OutputXYZTrajectoryForce.cpp' || echo './'`OutputXYZTrajectoryForce.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputXYZTrajectoryPos.o `test -f 'OutputXYZTrajectoryPos.cpp' || echo './'`OutputXYZTrajectoryPos.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o OutputXYZTrajectoryVel.o `test -f 'OutputXYZTrajectoryVel.cpp' || echo './'`OutputXYZTrajectoryVel.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o TopologyFactoryDetails.o `test -f 'TopologyFactoryDetails.cpp' || echo './'`TopologyFactoryDetails.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o buildTopology.o `test -f 'buildTopology.cpp' || echo './'`buildTopology.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o inputValueDefinitions.o `test -f 'inputValueDefinitions.cpp' || echo './'`inputValueDefinitions.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o parseCommandLine.o `test -f 'parseCommandLine.cpp' || echo './'`parseCommandLine.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' rm -f libfrontend.a ar cru libfrontend.a HelpTextFactory.o ForceFactoryDetails.o InputPosVel.o InputPosVelType.o IntegratorFactoryDetails.o Output.o OutputCache.o OutputCollection.o OutputDCDTrajectory.o OutputDiffusion.o OutputDihedrals.o OutputEnergies.o OutputFactoryDetails.o OutputFile.o OutputFinalXYZBinPos.o OutputFinalXYZBinVel.o OutputFinalXYZPos.o OutputFinalPDBPos.o OutputFinalXYZVel.o OutputMomentum.o OutputPaulTrap.o OutputPDBFramePos.o OutputScreen.o OutputTemperatures.o OutputXYZTrajectoryForce.o OutputXYZTrajectoryPos.o OutputXYZTrajectoryVel.o TopologyFactoryDetails.o buildTopology.o inputValueDefinitions.o parseCommandLine.o ranlib libfrontend.a Making all in factories c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I../../framework/factories -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o registerForceExemplars.o `test -f 'registerForceExemplars.cpp' || echo './'`registerForceExemplars.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I../../framework/factories -I/usr/local/include -O2 -pipe -fno-strict-aliasing -L/usr/local/lib -c -o registerForceExemplarsBonded.o `test -f 'registerForceExemplarsBonded.cpp' || echo './'`registerForceExemplarsBonded.cpp c++: warning: argument unused during compilation: '-L/usr/local/lib' In file included from registerForceExemplarsBonded.cpp:8: ./../framework/forces/ImproperSystemForce.h:72:7: error: use of undeclared identifier 'calcTorsion' calcTorsion(boundary,topo->impropers[i], positions, forces, (*energies)[ScalarStructure::IMPROPER],energies); ^ this-> registerForceExemplarsBonded.cpp:16:40: note: in instantiation of member function 'ProtoMol::ImproperSystemForce::evaluate' requested here ForceFactory::registerExemplar(new ImproperSystemForce()); ^ ./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify identifier to find this declaration in dependent base class void calcTorsion(const TBoundaryConditions &boundary, ^ In file included from registerForceExemplarsBonded.cpp:8: ./../framework/forces/ImproperSystemForce.h:93:4: error: use of undeclared identifier 'calcTorsion' calcTorsion(boundary, topo->impropers[j], positions, forces, (*energies)[ScalarStructure::IMPROPER],energies); ^ this-> registerForceExemplarsBonded.cpp:16:40: note: in instantiation of member function 'ProtoMol::ImproperSystemForce::parallelEvaluate' requested here ForceFactory::registerExemplar(new ImproperSystemForce()); ^ ./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify identifier to find this declaration in dependent base class void calcTorsion(const TBoundaryConditions &boundary, ^ In file included from registerForceExemplarsBonded.cpp:9: ./../framework/forces/DihedralSystemForce.h:75:7: error: use of undeclared identifier 'calcTorsion' calcTorsion(boundary,topo->dihedrals[i], positions, forces,(*energies)[ScalarStructure::DIHEDRAL],energies); ^ this-> registerForceExemplarsBonded.cpp:17:40: note: in instantiation of member function 'ProtoMol::DihedralSystemForce::evaluate' requested here ForceFactory::registerExemplar(new DihedralSystemForce()); ^ ./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify identifier to find this declaration in dependent base class void calcTorsion(const TBoundaryConditions &boundary, ^ In file included from registerForceExemplarsBonded.cpp:9: ./../framework/forces/DihedralSystemForce.h:96:4: error: use of undeclared identifier 'calcTorsion' calcTorsion(boundary, topo->dihedrals[j], positions, forces, (*energies)[ScalarStructure::DIHEDRAL],energies); ^ this-> registerForceExemplarsBonded.cpp:17:40: note: in instantiation of member function 'ProtoMol::DihedralSystemForce::parallelEvaluate' requested here ForceFactory::registerExemplar(new DihedralSystemForce()); ^ ./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify identifier to find this declaration in dependent base class void calcTorsion(const TBoundaryConditions &boundary, ^ In file included from registerForceExemplarsBonded.cpp:10: ./../framework/forces/HarmDihedralSystemForce.h:122:6: error: use of undeclared identifier 'calcTorsion' calcTorsion(boundary,topo->dihedrals[i], positions, forces,(*energies)[ScalarStructure::DIHEDRAL],energies); ^ this-> registerForceExemplarsBonded.cpp:18:40: note: in instantiation of member function 'ProtoMol::HarmDihedralSystemForce::evaluate' requested here ForceFactory::registerExemplar(new HarmDihedralSystemForce()); ^ ./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify identifier to find this declaration in dependent base class void calcTorsion(const TBoundaryConditions &boundary, ^ In file included from registerForceExemplarsBonded.cpp:10: ./../framework/forces/HarmDihedralSystemForce.h:152:6: error: use of undeclared identifier 'calcTorsion' calcTorsion(boundary,topo->dihedrals[j], positions, forces,(*energies)[ScalarStructure::DIHEDRAL],energies); ^ this-> registerForceExemplarsBonded.cpp:18:40: note: in instantiation of member function 'ProtoMol::HarmDihedralSystemForce::parallelEvaluate' requested here ForceFactory::registerExemplar(new HarmDihedralSystemForce()); ^ ./../framework/forces/MTorsionSystemForce.h:21:10: note: must qualify identifier to find this declaration in dependent base class void calcTorsion(const TBoundaryConditions &boundary, ^ 6 errors generated. *** Error code 1 Stop. make[4]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol/framework/factories *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol/framework *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol *** Error code 1 Stop. make: stopped in /usr/ports/biology/protomol ===> Cleaning for protomol-2.0.3_8