Date: Tue, 17 Jan 2017 07:12:46 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 110armv6-quarterly][math/libRmath] Failed for libRmath-3.3.2_1 in configure Message-ID: <201701170712.v0H7Ck8G001952@beefy15.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jrm@FreeBSD.org Last committer: antoine@FreeBSD.org Ident: $FreeBSD: branches/2017Q1/math/libRmath/Makefile 430833 2017-01-07 21:21:25Z antoine $ Log URL: http://beefy15.nyi.freebsd.org/data/110armv6-quarterly/431714/logs/libRmath-3.3.2_1.log Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=110armv6-quarterly&build=431714 Log: ====>> Building math/libRmath build started at Tue Jan 17 07:11:27 UTC 2017 port directory: /usr/ports/math/libRmath building for: FreeBSD 110armv6-quarterly-job-19 11.0-RELEASE-p5 FreeBSD 11.0-RELEASE-p5 r309692 arm maintained by: jrm@FreeBSD.org Makefile ident: $FreeBSD: branches/2017Q1/math/libRmath/Makefile 430833 2017-01-07 21:21:25Z antoine $ Poudriere version: 3.1.14 Host OSVERSION: 1200017 Jail OSVERSION: 1100122 Job Id: 19 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o UNAME_v=FreeBSD 11.0-RELEASE-p5 r309692 UNAME_r=11.0-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=armv6 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110armv6-quarterly/ref QEMU_EMULATING=1 UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=libRmath-3.3.2_1 OSREL=11.0 _OSRELEASE=11.0-RELEASE-p5 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=28 PWD=/usr/local/poudriere/data/.m/110armv6-quarterly/ref/.p/pool MASTERNAME=110armv6-quarterly SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1100122 ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --disable-nls --with-ICU=no --with-cairo=no --with-jpeglib=no --with-libpng=no --with-libtiff=no --with-readline=no --with-tcltk=no --with-x=no --without-libintl-prefix --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_header_iconv_h=no r_cv_header_zlib_h=yes F77="gfortran49" FC="gfortran49" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc49" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc49" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libRmath/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libRmath/work HOME=/wrkdirs/usr/ports/math/libRmath/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran49" FC="gfortran49" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc49" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc49" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libRmath/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libRmath/work HOME=/wrkdirs/usr/ports/math/libRmath/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -isystem /usr/local/include -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib /gcc49 -L/usr/local/lib/gcc49 -B/usr/local/bin" LIBS="-L/usr/local/lib" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- RMATH_SOVERSION="1" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/libRmath" EXAMPLESDIR="share/examples/libRmath" DATADIR="share/libRmath" WWWDIR="www/libRmath" ETCDIR="etc/libRmath" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libRmath DOCSDIR=/usr/local/share/doc/libRmath EXAMPLESDIR=/usr/local/share/examples/libRmath WWWDIR=/usr/local/www/libRmath ETCDIR=/usr/local/etc/libRmath --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> libRmath-3.3.2_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.9.4_1.txz pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended [110armv6-quarterly-job-19] Installing pkg-1.9.4_1... [110armv6-quarterly-job-19] Extracting pkg-1.9.4_1: .......... done ===> libRmath-3.3.2_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libRmath-3.3.2_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libRmath-3.3.2_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libRmath-3.3.2_1 for building => SHA256 Checksum OK for R-3.3.2.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libRmath-3.3.2_1 for building ===> Extracting for libRmath-3.3.2_1 => SHA256 Checksum OK for R-3.3.2.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for libRmath-3.3.2_1 =========================================================================== =======================<phase: build-depends >============================ ===> libRmath-3.3.2_1 depends on executable: gfortran49 - not found ===> Installing existing package /packages/All/gcc-4.9.4.txz pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended [110armv6-quarterly-job-19] Installing gcc-4.9.4... [110armv6-quarterly-job-19] `-- Installing indexinfo-0.2.6... [110armv6-quarterly-job-19] `-- Extracting indexinfo-0.2.6: .... done [110armv6-quarterly-job-19] `-- Installing mpc-1.0.3... [110armv6-quarterly-job-19] | `-- Installing gmp-5.1.3_3... [110armv6-quarterly-job-19] | `-- Extracting gmp-5.1.3_3: .......... done [110armv6-quarterly-job-19] | `-- Installing mpfr-3.1.5... [110armv6-quarterly-job-19] | `-- Extracting mpfr-3.1.5: .......... done [110armv6-quarterly-job-19] `-- Extracting mpc-1.0.3: ...... done [110armv6-quarterly-job-19] `-- Installing binutils-2.27_5,1... [110armv6-quarterly-job-19] | `-- Installing gettext-runtime-0.19.8.1_1... [110armv6-quarterly-job-19] | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [110armv6-quarterly-job-19] `-- Extracting binutils-2.27_5,1: .......... done [110armv6-quarterly-job-19] Extracting gcc-4.9.4: .......... done Message from gcc-4.9.4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc49 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> libRmath-3.3.2_1 depends on executable: gfortran49 - found ===> Returning to build of libRmath-3.3.2_1 ===> libRmath-3.3.2_1 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> libRmath-3.3.2_1 depends on shared library: libcurl.so - not found <snip> checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking whether /nxb-bin/usr/bin/cc needs -traditional... no checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for minix/config.h... (cached) no checking whether it is safe to define __EXTENSIONS__... yes checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp defining F77 to be gfortran49 checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran49 accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether /nxb-bin/usr/bin/c++ accepts -g... yes checking how to run the C++ preprocessor... /nxb-bin/usr/bin/c++ -E checking whether __attribute__((visibility())) is supported... yes checking whether /nxb-bin/usr/bin/cc accepts -fvisibility... yes checking whether gfortran49 accepts -fvisibility... yes checking for gcc... gcc checking whether we are using the GNU Objective C compiler... yes checking whether gcc accepts -g... yes checking for Objective C++ compiler... trying some possibilities checking whether /nxb-bin/usr/bin/c++ can compile ObjC++... no no working ObjC++ compiler found checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by /nxb-bin/usr/bin/cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking the maximum length of command line arguments... (cached) 262144 checking how to convert armv6-portbld-freebsd11.0 file names to armv6-portbld-freebsd11.0 format... func_convert_file_noop checking how to convert armv6-portbld-freebsd11.0 file names to toolchain format... func_convert_file_noop checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking for gawk... (cached) /usr/bin/awk checking command to parse /usr/local/bin/nm output from /nxb-bin/usr/bin/cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if /nxb-bin/usr/bin/cc supports -fno-rtti -fno-exceptions... yes checking for /nxb-bin/usr/bin/cc option to produce PIC... -fPIC -DPIC checking if /nxb-bin/usr/bin/cc PIC flag -fPIC -DPIC works... yes checking if /nxb-bin/usr/bin/cc static flag -static works... yes checking if /nxb-bin/usr/bin/cc supports -c -o file.o... yes checking if /nxb-bin/usr/bin/cc supports -c -o file.o... (cached) yes checking whether the /nxb-bin/usr/bin/cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... /nxb-bin/usr/bin/c++ -E checking for ld used by /nxb-bin/usr/bin/c++... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the /nxb-bin/usr/bin/c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking for /nxb-bin/usr/bin/c++ option to produce PIC... -fPIC -DPIC checking if /nxb-bin/usr/bin/c++ PIC flag -fPIC -DPIC works... yes checking if /nxb-bin/usr/bin/c++ static flag -static works... yes checking if /nxb-bin/usr/bin/c++ supports -c -o file.o... yes checking if /nxb-bin/usr/bin/c++ supports -c -o file.o... (cached) yes checking whether the /nxb-bin/usr/bin/c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran49 option to produce PIC... -fPIC checking if gfortran49 PIC flag -fPIC works... yes checking if gfortran49 static flag -static works... yes checking if gfortran49 supports -c -o file.o... yes checking if gfortran49 supports -c -o file.o... (cached) yes checking whether the gfortran49 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... no checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... (cached) yes checking for arpa/inet.h... (cached) yes checking for dl.h... (cached) no checking for dlfcn.h... (cached) yes checking for elf.h... (cached) yes checking features.h usability... no checking features.h presence... no checking for features.h... no checking for fcntl.h... (cached) yes checking for floatingpoint.h... (cached) yes checking fpu_control.h usability... no checking fpu_control.h presence... no checking for fpu_control.h... no checking for glob.h... (cached) yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking for langinfo.h... (cached) yes checking for netdb.h... (cached) yes checking for netinet/in.h... (cached) yes checking for pwd.h... (cached) yes checking for sched.h... (cached) yes checking for strings.h... (cached) yes checking for sys/param.h... (cached) yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for sys/select.h... (cached) yes checking for sys/socket.h... (cached) yes checking for sys/stat.h... (cached) yes checking for sys/time.h... (cached) yes checking for sys/times.h... (cached) yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking for utime.h... (cached) yes checking stdalign.h usability... yes checking stdalign.h presence... yes checking for stdalign.h... yes checking for errno.h... (cached) yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking for stdarg.h... (cached) yes checking for stdbool.h... (cached) yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... no checking return type of signal handlers... void checking for uint64_t... (cached) yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... (cached) yes checking for size_t... (cached) yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... (cached) yes checking for intptr_t... yes checking for uintptr_t... (cached) yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for /nxb-bin/usr/bin/cc option to accept ISO C99... none needed checking for /nxb-bin/usr/bin/cc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking size of int... 4 checking size of long... 4 checking size of long long... 8 checking size of double... 8 checking size of size_t... 4 checking size of long double... 8 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether /nxb-bin/usr/bin/cc supports -c -o FILE.lo... yes checking for /nxb-bin/usr/bin/cc option to support OpenMP... unsupported checking how to get verbose linking output from gfortran49... -v checking for Fortran 77 libraries of gfortran49... -L/usr/local/lib/gcc49 -L/usr/local/bin -L/usr/local/lib/gcc49/gcc/armv6-portbld-freebsd11.0/4.9.4 -L/usr/local/lib/gcc49/gcc/armv6-portbld-freebsd11.0/4.9.4/../../../../../armv6-portbld-freebsd11.0/lib -L/usr/local/lib/gcc49/gcc/armv6-portbld-freebsd11.0/4.9.4/../../.. -lgfortran -lm checking how to get verbose linking output from /nxb-bin/usr/bin/cc... -v checking for C libraries of /nxb-bin/usr/bin/cc... -L/usr/local/lib/gcc49 -L/usr/lib -lgcc_s checking for dummy main to link with Fortran 77 libraries... unknown configure: error: in `/wrkdirs/usr/ports/math/libRmath/work/R-3.3.2': configure: error: linking to Fortran libraries from C fails See `config.log' for more details ===> Script "configure" failed unexpectedly. Please report the problem to jrm@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/math/libRmath/work/R-3.3.2/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/math/libRmath
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