Date: Sun, 26 May 2024 21:57:14 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 9997daa47946 - main - biology/py-PySCeS: update 1.1.1 =?utf-8?Q?=E2=86=92?= 1.2.1 Message-ID: <202405262157.44QLvEeM015353@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=9997daa4794629faced65dbd8f0b1d49ab7bcdfa commit 9997daa4794629faced65dbd8f0b1d49ab7bcdfa Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2024-05-26 19:35:31 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2024-05-26 21:57:06 +0000 biology/py-PySCeS: update 1.1.1 → 1.2.1 Reported by: portscout --- biology/py-PySCeS/Makefile | 26 +++++++++++++------------- biology/py-PySCeS/distinfo | 6 +++--- biology/py-PySCeS/files/patch-pyproject.toml | 12 ++++++++++++ 3 files changed, 28 insertions(+), 16 deletions(-) diff --git a/biology/py-PySCeS/Makefile b/biology/py-PySCeS/Makefile index 5ca807f6ded2..d50bb3ccd733 100644 --- a/biology/py-PySCeS/Makefile +++ b/biology/py-PySCeS/Makefile @@ -1,5 +1,5 @@ -PORTNAME= PySCeS -DISTVERSION= 1.1.1 +PORTNAME= pysces +DISTVERSION= 1.2.1 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -7,25 +7,25 @@ DISTNAME= ${PORTNAME:tl}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Python Simulator for Cellular Systems -WWW= https://pysces.sourceforge.net/ +WWW= https://pysces.github.io/ LICENSE= BSD3CLAUSE -LICENSE_FILE= ${WRKSRC}/LICENCE.txt +LICENSE_FILE= ${WRKSRC}/LICENSE.txt -PY_DEPENDS= ${PYNUMPY} \ - ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}meson-python>0:devel/meson-python@${PY_FLAVOR} \ + ${PYNUMPY} PY_EXTRA= ${PYTHON_PKGNAMEPREFIX}python-libsbml>0:biology/py-python-libsbml@${PY_FLAVOR} -BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scikit-build>0:devel/py-scikit-build@${PY_FLAVOR} \ - cmake:devel/cmake-core \ - ${PY_DEPENDS} -RUN_DEPENDS= ${PY_DEPENDS} \ +RUN_DEPENDS= ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PY_EXTRA} USES= fortran localbase:ldflags python -USE_PYTHON= distutils autoplist pytest +USE_PYTHON= pep517 autoplist pytest + +LDFLAGS+= -lpython${PYTHON_VER} -LDFLAGS+= -lpython${PYTHON_VER} -shared # see https://github.com/PySCeS/pysces/issues/29 +BINARY_ALIAS= python3=${PYTHON_CMD} TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} diff --git a/biology/py-PySCeS/distinfo b/biology/py-PySCeS/distinfo index 070c6e317ddf..2d91e6fed642 100644 --- a/biology/py-PySCeS/distinfo +++ b/biology/py-PySCeS/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1690346893 -SHA256 (pysces-1.1.1.tar.gz) = 170f9ccdcd3ff0336d144f3891c54ee5dfb9b61b1e7129f48e96ff02d6c9b6e5 -SIZE (pysces-1.1.1.tar.gz) = 1036708 +TIMESTAMP = 1716746850 +SHA256 (pysces-1.2.1.tar.gz) = 5dbde64cf398c599f5303d9ce084a50e047080c0899951529774a822a549fc20 +SIZE (pysces-1.2.1.tar.gz) = 2753986 diff --git a/biology/py-PySCeS/files/patch-pyproject.toml b/biology/py-PySCeS/files/patch-pyproject.toml new file mode 100644 index 000000000000..334fd0cf97b2 --- /dev/null +++ b/biology/py-PySCeS/files/patch-pyproject.toml @@ -0,0 +1,12 @@ +--- pyproject.toml.orig 2024-04-05 22:51:04 UTC ++++ pyproject.toml +@@ -3,8 +3,7 @@ requires = [ + requires = [ + 'meson-python', + 'meson>=1.2.3', +- 'ninja', +- 'numpy>=1.26.0,<1.27', ++ 'numpy', + ] + + [tool.meson-python.args]
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