From owner-svn-ports-all@freebsd.org Fri Feb 19 09:22:31 2021 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 20247542143; Fri, 19 Feb 2021 09:22:31 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4DhmLv0KnGz3QLL; Fri, 19 Feb 2021 09:22:31 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id F311A114E; Fri, 19 Feb 2021 09:22:30 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 11J9MULe068715; Fri, 19 Feb 2021 09:22:30 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 11J9MUmQ068714; Fri, 19 Feb 2021 09:22:30 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <202102190922.11J9MUmQ068714@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Fri, 19 Feb 2021 09:22:30 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r566037 - in head/biology/spoa: . files X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/biology/spoa: . files X-SVN-Commit-Revision: 566037 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 19 Feb 2021 09:22:31 -0000 Author: yuri Date: Fri Feb 19 09:22:30 2021 New Revision: 566037 URL: https://svnweb.freebsd.org/changeset/ports/566037 Log: biology/spoa: Fix build after recent devel/cereal update; Fix LIB_DEPENDS Reported by: fallout Modified: head/biology/spoa/Makefile head/biology/spoa/files/patch-CMakeLists.txt Modified: head/biology/spoa/Makefile ============================================================================== --- head/biology/spoa/Makefile Fri Feb 19 09:11:57 2021 (r566036) +++ head/biology/spoa/Makefile Fri Feb 19 09:22:30 2021 (r566037) @@ -2,6 +2,7 @@ PORTNAME= spoa DISTVERSION= 4.0.7 +PORTREVISION= 2 CATEGORIES= biology MAINTAINER= yuri@FreeBSD.org @@ -13,8 +14,8 @@ LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= bioparser>0:biology/bioparser \ ${LOCALBASE}/include/biosoup/nucleic_acid.hpp:biology/biosoup \ cereal>0:devel/cereal \ - cpu_features>0:devel/cpu_features \ simde>0:devel/simde +LIB_DEPENDS= libcpu_features.so:devel/cpu_features RUN_DEPENDS= cereal>0:devel/cereal TEST_DEPENDS= googletest>0:devel/googletest Modified: head/biology/spoa/files/patch-CMakeLists.txt ============================================================================== --- head/biology/spoa/files/patch-CMakeLists.txt Fri Feb 19 09:11:57 2021 (r566036) +++ head/biology/spoa/files/patch-CMakeLists.txt Fri Feb 19 09:22:30 2021 (r566037) @@ -14,7 +14,7 @@ add_library(${PROJECT_NAME} src/alignment_engine.cpp -@@ -55,8 +56,8 @@ add_library(${PROJECT_NAME} +@@ -55,19 +56,19 @@ add_library(${PROJECT_NAME} src/dispatcher.cpp) target_include_directories(${PROJECT_NAME} PUBLIC $ @@ -24,8 +24,10 @@ + #$ $) target_link_libraries(${PROJECT_NAME} - cereal) -@@ -65,9 +66,9 @@ if (BUILD_SHARED_LIBS) +- cereal) ++ cereal::cereal) + if (BUILD_SHARED_LIBS) + set_property(TARGET ${PROJECT_NAME} PROPERTY SOVERSION "7.0.0") endif () if (spoa_generate_dispatch) @@ -38,6 +40,15 @@ list(APPEND ARCHITECTURES avx2 sse4.1 sse2) foreach(arch IN LISTS ARCHITECTURES) +@@ -78,7 +79,7 @@ if (spoa_generate_dispatch) + $ + $) + target_link_libraries(${PROJECT_NAME}_${arch} +- cereal) ++ cereal::cereal) + set_target_properties(${PROJECT_NAME}_${arch} PROPERTIES + COMPILE_FLAGS "-m${arch}") + if (BUILD_SHARED_LIBS) @@ -92,8 +93,8 @@ if (spoa_generate_dispatch) ${PROJECT_NAME}_sse4.1 ${PROJECT_NAME}_sse2)