Date: Sun, 7 Sep 2014 14:35:45 GMT From: pkg-fallout@FreeBSD.org To: wen@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 91i386-default-ssp][biology/emboss] Failed for emboss-6.6.0 in package Message-ID: <201409071435.s87EZjaM094957@beefy4.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: wen@FreeBSD.org Last committer: olgeni@FreeBSD.org Ident: $FreeBSD: head/biology/emboss/Makefile 357139 2014-06-09 11:21:52Z olgeni $ Log URL: http://beefy4.isc.freebsd.org/data/91i386-default-ssp/2014-09-07_00h41m27s/logs/emboss-6.6.0.log Build URL: http://beefy4.isc.freebsd.org/build.html?mastername=91i386-default-ssp&build=2014-09-07_00h41m27s Log: ====>> Building biology/emboss build started at Sun Sep 7 14:27:32 UTC 2014 port directory: /usr/ports/biology/emboss building for: FreeBSD pkg.FreeBSD.org 9.1-RELEASE-p13 FreeBSD 9.1-RELEASE-p13 i386 maintained by: wen@FreeBSD.org Makefile ident: $FreeBSD: head/biology/emboss/Makefile 357139 2014-06-09 11:21:52Z olgeni $ Poudriere version: 3.1-pre Host OSVERSION: 1100027 Jail OSVERSION: 901000 ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=901000 UNAME_v=FreeBSD 9.1-RELEASE-p13 UNAME_r=9.1-RELEASE-p13 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/91i386-default-ssp/ref PKG_EXT=txz FORCE_PACKAGE=yes PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=emboss-6.6.0 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add OLDPWD=/root PWD=/usr/local/poudriere/data/.m/91i386-default-ssp/ref/.p/pool MASTERNAME=91i386-default-ssp USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/.p/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for emboss-6.6.0: DOCS=on: Build and/or install documentation X11=on: X11 (graphics) support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --with-libiconv-prefix=/usr/local --with-docroot=/usr/local/emboss/share/EMBOSS/doc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local/emboss ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" MAKE=gmake SHELL=/bin/sh CONFIG_SHELL=/bin/sh PATH=/usr/local/libexec/ccache:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin CCACHE_DIR="/root/.ccache" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" MOTIFLIB="-L/usr/local/lib -lXm -lXp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local/emboss LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local/emboss" PATH=/usr/local/libexec/ccache:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=9.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local/emboss PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/EMBOSS/doc" EXAMPLESDIR="share/examples/emboss" DATADIR="share/EMBOSS" WWWDIR="www/emboss" ETCDIR="etc/emboss" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local/emboss DATADIR=/usr/local/emboss/share/EMBOSS PREFIX=/usr/local/emboss LOCALBASE=/usr/local DATADIR=/usr/local/emboss/share/EMBOSS DOCSDIR=/usr/local/emboss/share/EMBOSS/doc EXAMPLESDIR=/usr/local/emboss/share/examples/emboss WWWDIR=/usr/local/emboss/www/emboss ETCDIR=/usr/local/emboss/etc/emboss --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes #WITH_PKGNG=devel #### /usr/local/etc/poudriere.d/ssp-make.conf #### WITH_SSP_PORTS=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> emboss-6.6.0 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.3.7.txz [pkg.FreeBSD.org] Installing pkg-1.3.7... done Message for pkg-1.3.7: If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of emboss-6.6.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0 for building => SHA256 Checksum OK for emboss/EMBOSS-6.6.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0 for building ===> Extracting for emboss-6.6.0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0 for building => SHA256 Checksum OK for emboss/EMBOSS-6.6.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for emboss-6.6.0 ===> Applying FreeBSD patches for emboss-6.6.0 =========================================================================== =======================<phase: build-depends >============================ ===> emboss-6.6.0 depends on executable: clustalw - not found ===> Verifying install for clustalw in /usr/ports/biology/clustalw ===> Installing existing package /packages/All/clustalw-2.1_1.txz [pkg.FreeBSD.org] Installing clustalw-2.1_1... done ===> Returning to build of emboss-6.6.0 ===> emboss-6.6.0 depends on executable: primer3 - not found ===> Verifying install for primer3 in /usr/ports/biology/primer3 ===> Installing existing package /packages/All/primer3-2.3.6.txz [pkg.FreeBSD.org] Installing primer3-2.3.6... done ===> Returning to build of emboss-6.6.0 ===> emboss-6.6.0 depends on executable: gmake - not found ===> Verifying install for gmake in /usr/ports/devel/gmake ===> Installing existing package /packages/All/gmake-3.82_1.txz [pkg.FreeBSD.org] Installing indexinfo-0.2... done [pkg.FreeBSD.org] Installing libiconv-1.14_4... done [pkg.FreeBSD.org] Installing gettext-0.18.3.1_1... done [pkg.FreeBSD.org] Installing gmake-3.82_1... done ===> Returning to build of emboss-6.6.0 ===> emboss-6.6.0 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/x11.pc in /usr/ports/x11/libX11 ===> Installing existing package /packages/All/libX11-1.6.2_2,1.txz [pkg.FreeBSD.org] Installing kbproto-1.0.6... done [pkg.FreeBSD.org] Installing xproto-7.0.26... done [pkg.FreeBSD.org] Installing libXau-1.0.8_2... done [pkg.FreeBSD.org] Installing libXdmcp-1.1.1_2... done [pkg.FreeBSD.org] Installing libpthread-stubs-0.3_5... done [pkg.FreeBSD.org] Installing libxml2-2.9.1_1... done [pkg.FreeBSD.org] Installing libxcb-1.10_2... done [pkg.FreeBSD.org] Installing libX11-1.6.2_2,1... done ===> Returning to build of emboss-6.6.0 ===> emboss-6.6.0 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/xpm.pc in /usr/ports/x11/libXpm ===> Installing existing package /packages/All/libXpm-3.5.11_2.txz [pkg.FreeBSD.org] Installing xextproto-7.3.0... done [pkg.FreeBSD.org] Installing libXext-1.3.2_2,1... done [pkg.FreeBSD.org] Installing libICE-1.0.9,1... done [pkg.FreeBSD.org] Installing libSM-1.2.2_2,1... done [pkg.FreeBSD.org] Installing libXt-1.1.4_2,1... done [pkg.FreeBSD.org] Installing libXpm-3.5.11_2... done ===> Returning to build of emboss-6.6.0 ===> emboss-6.6.0 depends on file: /usr/local/bin/ccache - not found ===> Verifying install for /usr/local/bin/ccache in /usr/ports/devel/ccache ===> Installing existing package /packages/All/ccache-3.1.9_8.txz [pkg.FreeBSD.org] Installing ccache-3.1.9_8... done Create compiler links... <snip> Making all in nucleus gmake[4]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus' gmake[4]: Nothing to be done for `all'. gmake[4]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus' Making all in emboss gmake[4]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' Making all in acd gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd' Making all in data gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' Making all in AAINDEX gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX' Making all in CODONS gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS' Making all in JASPAR_CNE gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE' Making all in JASPAR_CORE gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE' Making all in JASPAR_FAM gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM' Making all in JASPAR_PBM gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM' Making all in JASPAR_PBM_HLH gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH' Making all in JASPAR_PBM_HOMEO gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO' Making all in JASPAR_PHYLOFACTS gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS' Making all in JASPAR_POLII gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII' Making all in JASPAR_SPLICE gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE' Making all in OBO gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO' Making all in PRINTS gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS' Making all in PROSITE gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE' Making all in REBASE gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE' Making all in TAXONOMY gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY' gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' gmake[6]: Nothing to be done for `all-am'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' Making all in index gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index' gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' gmake[5]: Nothing to be done for `all-am'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' gmake[4]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' Making all in test gmake[4]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' Making all in data gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data' Making all in embl gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl' Making all in genbank gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank' Making all in pir gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir' Making all in swiss gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss' Making all in swnew gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew' Making all in testdb gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb' gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' gmake[5]: Nothing to be done for `all-am'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' gmake[4]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' Making all in doc gmake[4]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' Making all in manuals gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals' Making all in programs gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' Making all in html gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html' Making all in text gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text' gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' gmake[6]: Nothing to be done for `all-am'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' Making all in tutorials gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials' gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' gmake[5]: Nothing to be done for `all-am'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' gmake[4]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' Making all in jemboss gmake[4]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' Making all in images gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images' Making all in lib gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' Making all in axis gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis' gmake[6]: Nothing to be done for `all'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis' gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' gmake[6]: Nothing to be done for `all-am'. gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' Making all in resources gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' Making all in utils gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils' gmake[5]: Nothing to be done for `all'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils' gmake[5]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[5]: Nothing to be done for `all-am'. gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[4]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[4]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[4]: Nothing to be done for `all-am'. gmake[4]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[3]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[2]: Nothing to be done for `install-data-am'. gmake[2]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[1]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' install -o root -g wheel -m 444 /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/emboss.default.template /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS /usr/sbin/chown root:wheel /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/emboss.default.template ====> Compressing man pages (compress-man) ===> Installing ldconfig configuration file =========================================================================== =======================<phase: package >============================ ===> Building package for emboss-6.6.0 pkg-static: lstat(/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/%D/): No such file or directory make: don't know how to make delete-package-links. Stop *** [do-package] Error code 2 Stop in /usr/ports/biology/emboss. *** [/wrkdirs/usr/ports/biology/emboss/work/.package_done.emboss._usr_local_emboss] Error code 1 Stop in /usr/ports/biology/emboss.
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