From owner-svn-ports-head@freebsd.org Sun Dec 8 16:57:14 2019 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id A58301E83D0; Sun, 8 Dec 2019 16:57:14 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 47WCDB3ySmz4H8M; Sun, 8 Dec 2019 16:57:14 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 6ADCD53F0; Sun, 8 Dec 2019 16:57:14 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id xB8GvEpe064363; Sun, 8 Dec 2019 16:57:14 GMT (envelope-from sunpoet@FreeBSD.org) Received: (from sunpoet@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id xB8GvEPL064362; Sun, 8 Dec 2019 16:57:14 GMT (envelope-from sunpoet@FreeBSD.org) Message-Id: <201912081657.xB8GvEPL064362@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: sunpoet set sender to sunpoet@FreeBSD.org using -f From: Sunpoet Po-Chuan Hsieh Date: Sun, 8 Dec 2019 16:57:14 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r519354 - head/biology/p5-Bio-ASN1-EntrezGene X-SVN-Group: ports-head X-SVN-Commit-Author: sunpoet X-SVN-Commit-Paths: head/biology/p5-Bio-ASN1-EntrezGene X-SVN-Commit-Revision: 519354 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 08 Dec 2019 16:57:14 -0000 Author: sunpoet Date: Sun Dec 8 16:57:13 2019 New Revision: 519354 URL: https://svnweb.freebsd.org/changeset/ports/519354 Log: Install Bio::SeqIO::entrezgene - Bump PORTREVISION for package change - Take maintainership Bio::SeqIO::entrezgene has been removed from BioPerl since 1.7.3. Modified: head/biology/p5-Bio-ASN1-EntrezGene/Makefile head/biology/p5-Bio-ASN1-EntrezGene/pkg-plist Modified: head/biology/p5-Bio-ASN1-EntrezGene/Makefile ============================================================================== --- head/biology/p5-Bio-ASN1-EntrezGene/Makefile Sun Dec 8 16:57:08 2019 (r519353) +++ head/biology/p5-Bio-ASN1-EntrezGene/Makefile Sun Dec 8 16:57:13 2019 (r519354) @@ -3,12 +3,13 @@ PORTNAME= Bio-ASN1-EntrezGene PORTVERSION= 1.73 +PORTREVISION= 1 PORTEPOCH= 1 CATEGORIES= biology perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- -MAINTAINER= perl@FreeBSD.org +MAINTAINER= sunpoet@FreeBSD.org COMMENT= Regular expression-based Perl Parser for NCBI Entrez Gene LICENSE= ART10 GPLv1+ @@ -22,9 +23,5 @@ USES= perl5 USE_PERL5= configure NO_ARCH= yes - -post-patch: -# do not install Bio::SeqIO::entrezgene which is identical with the one from p5-BioPerl - @${RM} ${WRKSRC}/lib/Bio/SeqIO/entrezgene.pm .include Modified: head/biology/p5-Bio-ASN1-EntrezGene/pkg-plist ============================================================================== --- head/biology/p5-Bio-ASN1-EntrezGene/pkg-plist Sun Dec 8 16:57:08 2019 (r519353) +++ head/biology/p5-Bio-ASN1-EntrezGene/pkg-plist Sun Dec 8 16:57:13 2019 (r519354) @@ -2,7 +2,9 @@ %%SITE_PERL%%/Bio/ASN1/EntrezGene/Indexer.pm %%SITE_PERL%%/Bio/ASN1/Sequence.pm %%SITE_PERL%%/Bio/ASN1/Sequence/Indexer.pm +%%SITE_PERL%%/Bio/SeqIO/entrezgene.pm %%PERL5_MAN3%%/Bio::ASN1::EntrezGene.3.gz %%PERL5_MAN3%%/Bio::ASN1::EntrezGene::Indexer.3.gz %%PERL5_MAN3%%/Bio::ASN1::Sequence.3.gz %%PERL5_MAN3%%/Bio::ASN1::Sequence::Indexer.3.gz +%%PERL5_MAN3%%/Bio::SeqIO::entrezgene.3.gz