From nobody Mon Dec 15 03:45:37 2025 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4dV5Ys4mCWz6K92F for ; Mon, 15 Dec 2025 03:45:37 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R12" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4dV5Ys4LXYz3Cpn for ; Mon, 15 Dec 2025 03:45:37 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1765770337; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=B0KyD1NZC1KK1FtZ/k9lmsIxWyfRpOmc8rCFc6S1PNk=; b=gzftJzKVTwAzkOY2mf0DkBmFaSCTHepqkvJdWSgQRnHQEXTnoEZ6+bweeK6jmrqjNGmz7D j5ynrumC21vVNFzXMAtHKWTHamRWwQLcJ8csh6FkqJiwV1j0Es2w2l1RSiiOZlDFf7awwi uCf0tSEn/xhLfoLBHUMLMTG6tgzA96NXH7HIps2Fc0bik10Eu1NkhNSGONu1OSDk670y32 n3MO2BoFQKONDNWJHdc/kTC1u5lrdQ5YD54hwADGSDi4ECCF/Ie8Q+bvtsWhPSGgLj2RF8 Yqn404O8iAxA08eWFPpF7lrZ2jh3Pm+zNTWFc3BcDdPHHbGt/hb/Bkzk1Ycafw== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1765770337; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=B0KyD1NZC1KK1FtZ/k9lmsIxWyfRpOmc8rCFc6S1PNk=; b=KQnys5wBAornYUPxtHeTS6X+aerzFDRKnUzdsElOyQ1M1i9zf5k0ZEBnOhkS90BUAYf19H QY/Rb6V9BauPD7oIJImaj+q90lBqRR7CMiVY2zFwMVM4C3Y71NrWQdG4+aNOAndZ5/2GFv enitBdAouLa3AGYdZBfQuklHNj4mTT2EW/7UdvMtDRBFNr5ANb8ruSmZzlrv3wI7Kf2Y73 XKiY6Z7Ki8FkWEmVv9vx8Th6WX/kof55my/4XJ3ykNUy+NjZy4PrP+xc1KN4KYqoAkYZDs 5Rw4f2IwvZclE8oM7+8YXeOG8cpdmo/bgMDz84hxmehxJylEaXZiofC7e8OSlQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1765770337; a=rsa-sha256; cv=none; b=c+xl6ISUAPreIz0o+qDJPMcBszKog0YKeirIk0zCaGdu47mNGwAjCtk8zHpDCWYRl5QAUC 9G9wyaT/hBN14fqTJgV4j/rAnXvChZbI1OYCjayiQGnjn6xPuWQ0m+0vU9kdA32ByfU9Cn PwgNXmednzUJwjWCabK4GKw+Cu/p2aihpJsE7toy2qirDLSirelv6tzlnu50QPAPbKy/hE zBdI+p/uCro96qBKFqpAlzrk7VPN6vpbxnTSIzRV21TJCtRBDuNwypJA9C2LSQOiq+aEUP v2+WxFWqPbJtnsF1uAby129L3CuRjxyX1Z47+uHDc+cmXFcvXCyQH49NafOAhw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4dV5Ys3J3gz12f7 for ; Mon, 15 Dec 2025 03:45:37 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from git (uid 1279) (envelope-from git@FreeBSD.org) id 3d8bf by gitrepo.freebsd.org (DragonFly Mail Agent v0.13+ on gitrepo.freebsd.org); Mon, 15 Dec 2025 03:45:37 +0000 To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Joseph Mingrone Subject: git: 7bc347cd267e - main - biology/iqtree: Update to 3.0.1 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jrm X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 7bc347cd267e0e4627158e8475d926460fd8496b Auto-Submitted: auto-generated Date: Mon, 15 Dec 2025 03:45:37 +0000 Message-Id: <693f8461.3d8bf.fd88cb9@gitrepo.freebsd.org> The branch main has been updated by jrm: URL: https://cgit.FreeBSD.org/ports/commit/?id=7bc347cd267e0e4627158e8475d926460fd8496b commit 7bc347cd267e0e4627158e8475d926460fd8496b Author: Joseph Mingrone AuthorDate: 2025-12-15 03:38:02 +0000 Commit: Joseph Mingrone CommitDate: 2025-12-15 03:45:01 +0000 biology/iqtree: Update to 3.0.1 Release notes: https://github.com/iqtree/iqtree3/releases/tag/v3.0.1 Sponsored by: The FreeBSD Foundation --- biology/iqtree/Makefile | 9 ++++----- biology/iqtree/distinfo | 10 +++++----- 2 files changed, 9 insertions(+), 10 deletions(-) diff --git a/biology/iqtree/Makefile b/biology/iqtree/Makefile index 6d4837298edc..af11d67a7c5a 100644 --- a/biology/iqtree/Makefile +++ b/biology/iqtree/Makefile @@ -1,7 +1,6 @@ PORTNAME= iqtree DISTVERSIONPREFIX= v -DISTVERSION= 2.4.0 -PORTREVISION= 3 +DISTVERSION= 3.0.1 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org @@ -20,9 +19,9 @@ LIB_DEPENDS= libboost_filesystem.so:devel/boost-libs USES= cmake eigen:3 USE_GITHUB= yes -GH_PROJECT= iqtree2 +GH_PROJECT= iqtree3 GH_TUPLE= tothuhien:lsd2:c61110f3a4fa05325b45c97b2134792ff9d55d4c:tothuhien/lsd2 \ - iqtree:cmaple:3946f47731699573ed2268e00aa7996a3458d4eb:iqtree/cmaple + iqtree:cmaple:29df93e77b7ad159b19e8cdd8150545baa1221ae:iqtree/cmaple PLIST_FILES= bin/iqtree PORTEXAMPLES= custom_distributions.txt example.cf example.nex example.phy \ @@ -31,7 +30,7 @@ PORTEXAMPLES= custom_distributions.txt example.cf example.nex example.phy \ OPTIONS_DEFINE= EXAMPLES do-install: - ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/iqtree2 ${STAGEDIR}${PREFIX}/bin/iqtree + ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/iqtree3 ${STAGEDIR}${PREFIX}/bin/iqtree do-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} diff --git a/biology/iqtree/distinfo b/biology/iqtree/distinfo index ae72ac55ee39..f42a38d7c5f0 100644 --- a/biology/iqtree/distinfo +++ b/biology/iqtree/distinfo @@ -1,7 +1,7 @@ -TIMESTAMP = 1739123157 -SHA256 (iqtree-iqtree2-v2.4.0_GH0.tar.gz) = 06a3351de0ed3c44a3e197e94a5d0cc3de7359c0be79eab1f41fb83459234619 -SIZE (iqtree-iqtree2-v2.4.0_GH0.tar.gz) = 5524827 +TIMESTAMP = 1765767206 +SHA256 (iqtree-iqtree3-v3.0.1_GH0.tar.gz) = 2daff8eaa24faaeac3dee9ac63af9fd7b79cc94cf7031671f0068b051b12c55f +SIZE (iqtree-iqtree3-v3.0.1_GH0.tar.gz) = 5172154 SHA256 (tothuhien-lsd2-c61110f3a4fa05325b45c97b2134792ff9d55d4c_GH0.tar.gz) = 9bbeaa0f8f35783c1d8dec74df6c93a804dbca808fa04484f9123de4e7258b53 SIZE (tothuhien-lsd2-c61110f3a4fa05325b45c97b2134792ff9d55d4c_GH0.tar.gz) = 1529381 -SHA256 (iqtree-cmaple-3946f47731699573ed2268e00aa7996a3458d4eb_GH0.tar.gz) = 712016835e40c26c1e69529fca1bec46a7102ede3775e1b4b6589c4b6074410a -SIZE (iqtree-cmaple-3946f47731699573ed2268e00aa7996a3458d4eb_GH0.tar.gz) = 4806755 +SHA256 (iqtree-cmaple-29df93e77b7ad159b19e8cdd8150545baa1221ae_GH0.tar.gz) = f8b5115823614b4c710a13ded1b38b59953c9f3127ced46246d1a4b1db026e37 +SIZE (iqtree-cmaple-29df93e77b7ad159b19e8cdd8150545baa1221ae_GH0.tar.gz) = 4807064